Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1 100 2e-16 >seq1 Length=2541256 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45102 AGTCTTCGCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGT 45161 || |||||||||| | || | | |||| ||| || |||||||||||||| ||||||| Sbjct 1681880 AGGCTTCGCCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGT 1681939 Query 45162 AGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGT 45221 ||||| || ||| |||| || || || || |||||||| |||| ||||| |||| Sbjct 1681940 AGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGT 1681999 Query 45222 CGGGAGGCACACCCTCCTTGTCC 45244 | || || | |||||||||||| Sbjct 1682000 CCGGGGGGATGCCCTCCTTGTCC 1682022 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| |||||||||||| || ||| |||| || Sbjct 2427683 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTCG 2427624 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || ||||| |||| ||||| ||||| || || | |||||||||||| Sbjct 2427623 AGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 2427567 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || |||||||||||||| |||||||||||| || ||| |||| || Sbjct 1682171 ACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 1682230 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || || || || || |||| ||||| ||||| || || | |||||||||||| Sbjct 1682231 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCC 1682287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395072874365143