Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5 179 5e-40 >seq5 Length=493739 Score = 179 bits (198), Expect = 5e-40 Identities = 613/945 (65%), Gaps = 18/945 (2%) Strand=Plus/Minus Query 62943 GCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 63002 |||| || |||||||| ||||| || || |||| | || || || | || ||| Sbjct 439057 GCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGACGTGTACTGCACGATTTCA 438998 Query 63003 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63062 ||| ||||| | ||||||| || || | |||||||| || ||| ||| || Sbjct 438997 CAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTGGTTCGACTTCGCGTTGCAA 438938 Query 63063 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63122 ||||| || || || ||||| ||||| || ||||| ||||| | | || || | Sbjct 438937 GCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTGGCTCTGGAGTATGGCGAAC 438878 Query 63123 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT--CTT-TCGTATAGAGT 63178 |||| ||||| | || || || || | | | | ||| ||||| || Sbjct 438877 CAGAGCGACTGG-GCAGGGAT---AGTCTTACGACCCATGCCGGCCTTCTCGTACTTGGT 438822 Query 63179 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACA 63238 ||||| ||||||||||||||||| || | || | | | | ||||||||||| || Sbjct 438821 ATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCACGGCATTCATCCGGGCA 438762 Query 63239 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63298 |||||||| ||| || |||| | | ||| || ||||| || |||||||||||||| || Sbjct 438761 CATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAAGATCAGGAATCCAGAG 438702 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || ||| || || | || | | ||||| || |||||| | ||| | Sbjct 438701 CGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCAAATCCAA 438642 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63418 || |||| ||||||| |||||||| |||| ||| ||||| | | || || || Sbjct 438641 AAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCTTGCGCTT 438582 Query 63419 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63478 || || || |||| ||| | ||||| |||| ||| | |||||| || | ||| Sbjct 438581 ACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACAAT 438522 Query 63479 ACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAAT 63538 |||||| |||| || || ||| || ||| | || ||||| | || || Sbjct 438521 ACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGGCA 438462 Query 63539 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63598 || || || || || || || || ||| || || ||| || | |||||||| | Sbjct 438461 CGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCGAA 438402 Query 63599 GATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63658 || || | |||||| |||||| || | || || |||||||||||| | | Sbjct 438401 TATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAGCAACTAGACATTTGGGGCCT 438342 Query 63659 AGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT----TTCAGAAA 63714 |||||| | | || | || |||| ||||| || || |||| ||| || Sbjct 438341 TTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTGAAATATTTCTGGCTCATCAA 438282 Query 63715 GTAGATTGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACA 63773 || || ||||||| || | || | || | ||| | || || || | | ||| Sbjct 438281 GT-GA---TACGTCTGGAT-GGTGCGTTCGAGATCGCCGCAGTGTATACCCGCCGAAACA 438227 Query 63774 CGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGAT 63833 ||||| | ||||||||| || | |||||||||||||| || || || | ||||||| Sbjct 438226 CGCATGAGCATGTGCTGTGGACGTTCAACAATTTTGTCGTCGATGCGCAGAAGGTAGGAT 438167 Query 63834 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63878 |||||||||||| | ||| || || | ||| ||||| ||| Sbjct 438166 CGTTCCAAAGTTTTCAGACCGAAGTAATCATATTGGAAGTCCCGT 438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813797476240