Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_005857.1 Length=51601 Score E Sequences producing significant alignments: (Bits) Value seq14 435 1e-117 >seq14 Length=3228 Score = 435 bits (482), Expect = 1e-117 Identities = 785/1140 (69%), Gaps = 12/1140 (1%) Strand=Plus/Plus Query 27456 GCTTCATTAT-TACTCCTCCCAACGTGGCTTAATCAAATCATCAAAAATTTCCTGGCAAA 27514 |||||||||| || || ||||| ||||| ||||||| | ||| |||||||| | ||| | Sbjct 948 GCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGATCGAAAATTTCATTGCAGA 1006 Query 27515 CAGGCTCCCAAATAGAAACTGCATTTCGCCAGGCGTTAAGTGTTGAGCGCTGATAAGCAG 27574 |||| ||||||||||||| ||||||| |||||| | || ||||| |||| | | Sbjct 1007 CAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTTGAAGAGCGTTGATCAATGG 1066 Query 27575 CCTGCTCAAATACCGTACGCATTTTTATTTGGCCCTTTCCTACTTCATCTGTCACCCTGA 27634 |||| ||||| || || | ||| || || || || || |||||||| || | | | Sbjct 1067 CCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCAACTTCATCCGTTTCACGTA 1126 Query 27635 CAACTTGACGCAGAACCATCGACCCCCACGTATTTCTTATCTGCTCTTCCATCCAGCGCG 27694 |||| | |||||||| ||||| | || | || ||||| |||||||| | | Sbjct 1127 CAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATTTGCTCCTCCATCCACGGGG 1186 Query 27695 ACTGATTACCAGTAGTCAGGCTGTATTTGGTTAGCAGCAGTCGTACCACCGGCTCGAAAC 27754 ||||| ||| || | |||||||||||| |||| | ||||| | |||||||| | Sbjct 1187 ACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATACGTACATCAGGCTCGAACC 1246 Query 27755 CGCCTAAATCAACGGTTTTTAGTAGGTCCAGAAGCATGGTGAAGAACTGCAGAACGGATG 27814 | | ||||||| | || || || || ||||||| ||| |||||||| |||| | Sbjct 1247 CTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCGAAAAACTGCAGTGCGGAGG 1306 Query 27815 AATAATCAAATAGCTCTGCAGGGGTAGCTACGACAATAATATCGGCAGCACAAACAACAT 27874 || ||||| | ||| ||||| || | || | | | ||| |||||||| || |||| Sbjct 1307 TGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACATCAGCAGCACATACGACAT 1366 Query 27875 TAATCGTCCCTGTTCCGAGGTTAGGAGCGCTATCAATAACGATAATGTCATAGTTATCCC 27934 ||||||| || | || |||||||| ||||| |||||||| || | ||||||| || Sbjct 1367 TAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACTATGACATCATAGTCATGAG 1426 Query 27935 ATACGGATTCTATAGCAGCCCGTAGCATCAGGTGAGG--CGGATGAGGTAGTTTTCCTTG 27992 || | ||| || || || ||||||||||| || ||| || || ||||| |||| Sbjct 1427 CAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCGG-TG-GGCAGTTTACCTT- 1483 Query 27993 GGCGTGGTATT---GCATCAGGTCCGTTTCGATACGGTGAAGCGCCAAGCAGCTGGGGAT 28049 | | ||| ||| | || ||||| |||||||| || |||| ||| || || Sbjct 1484 --CATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGCCAGACAGGAAGGAAT 1541 Query 28050 AATGTCCAGACCTGGCCAGCAGGTCGGCTTTATAGCGTATTCCGCATTATCACGCTCACC 28109 |||||| || || |||||||| || |||||||| || || ||| || || || Sbjct 1542 AATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGACATCGTCCTTTTCCCC 1601 Query 28110 AAGGTAAAACGGGAGCAAAGTATCATCGGCGTGAATGTGCAAATCAGGCACATAGCCATG 28169 ||| || || || || | ||| || || || ||||| || | ||| || || | || || Sbjct 1602 AAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGATCTGGTACCCATCCGTG 1661 Query 28170 ATACATAGAGGCGGTTCCCTGCGGATCATTACCTTCAATGAGTAGAACTCGGTGACCCTG 28229 |||||| ||||| |||||||| || || |||||||| | ||| | ||| || | |||| Sbjct 1662 ATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCAAAACACGTAGCCCCTT 1721 Query 28230 TAAGGCTAACCATTGAGCTTCATGTACTGCAGATGAGGTTTTATAAACGCCACCTTTGTG 28289 | || | ||||| ||| || | | ||||||||| |||||||||||||| || Sbjct 1722 CAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGTAAACGCCACCTTTATG 1781 Query 28290 TGACATAACAGCTAAAACGGCTGGATTTTTATCGGCTGGCCGTTGATTAGGATTACCGAA 28349 | ||| | | || | |||| | || | | ||| | | |||| || Sbjct 1782 GGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTCGCAATCGCGTACCAAA 1841 Query 28350 AATGTTCCGCATATGGCTAATTTGGTCGATGGTATAGCCAGCACGACGTTCGACGCGGCC 28409 | | |||||||| ||||||| || || ||||| ||| |||| | || || || || Sbjct 1842 CACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACACGTTGCTCAACCCGTCC 1901 Query 28410 ACGCAATTCAAAATCAGGTGGCGGTAACCGCCCATTCTTCTCAGCATCTCTAATCGCTTG 28469 || | ||| | ||| || |||||| ||||| ||||| |||||||| || || || Sbjct 1902 TCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGGCATCTCTGATAGCCTG 1961 Query 28470 CGGTGAAACACCGATTAAATCAGCAACCTCGGTTATCCCCCAGCGACGAGTAATCTTACG 28529 | ||||| || | |||||| || | || ||| | |||||| || || || || | Sbjct 1962 AGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGCGCCGGGTTATTTTCCT 2021 Query 28530 TGCTTCAGGGCTATCATCACCAAATTGCGCTATGGCAATGGCTTGCGTCATCTCTTGTCC 28589 ||||| ||||| |||||| ||| || || ||||| || || | |||||| || || || Sbjct 2022 CGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCTTCGTCATTTCATGACC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 165000653612698