Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq3 127 1e-24 seq2 127 1e-24 >seq3 Length=3518759 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||||| | |||||||| || |||||||| Sbjct 500343 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCGT 500402 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 500403 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 500437 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||||| | |||||||| || |||||||| Sbjct 610983 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCGT 611042 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 611043 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 611077 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| | || ||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 502293 CTCTTTCCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTAAGCTATCGGTCTCACAC 502352 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||| ||||| Sbjct 502353 CAATATTTAGTCTTAT 502368 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| | || ||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 612931 CTCTTTCCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTAAGCTATCGGTCTCACAC 612990 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||| ||||| Sbjct 612991 CAATATTTAGTCTTAT 613006 >seq2 Length=2823968 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| |||||||||| | |||||||| || |||||||| Sbjct 1833477 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGATGGCAGATAGGGACAGTGGGAATCTCGT 1833418 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1833417 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1833383 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| | || ||||||||||| |||||||||||||||||||| |||||||||||| | Sbjct 1831529 CTCTTTCCAGAGTTCTTTTCATCTTTCCCTCACGGTACTTGTAAGCTATCGGTCTCACAC 1831470 Query 20009 TAATATTTAGCCTTAT 20024 ||||||||| ||||| Sbjct 1831469 CAATATTTAGTCTTAT 1831454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945228312373