Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq1 118 3e-21 seq3 89.7 1e-12 >seq1 Length=2541256 Score = 118 bits (130), Expect = 3e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||||| || || ||||| || ||||||| | Sbjct 1682153 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 1682212 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || || |||||||||||||| || ||| Sbjct 1682213 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 1682272 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || |||||||| |||| || || | || || Sbjct 1682273 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCGACC 1682332 Query 288427 TCGAGCGTGATCGTCTTCCC 288446 ||||||||||| ||||| || Sbjct 1682333 TCGAGCGTGATGGTCTTGCC 1682352 Score = 114 bits (126), Expect = 3e-20 Identities = 148/203 (73%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||||| || || ||||| || ||||||| | Sbjct 2427701 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2427642 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| ||||||||||| || || ||| Sbjct 2427641 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGG---TCCGGG 2427585 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || || || || |||||||| || || || |||||||| |||| || || | || Sbjct 2427584 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCG 2427525 Query 288424 ACTTCGAGCGTGATCGTCTTCCC 288446 || ||||||||||| ||||| || Sbjct 2427524 ACCTCGAGCGTGATGGTCTTGCC 2427502 Score = 100 bits (110), Expect = 7e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || || || || | ||||| || || ||||| || ||||||| | Sbjct 1681888 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 1681947 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || || || ||||| ||||||||||| || ||| Sbjct 1681948 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGG 1682007 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || |||||||| || || || || ||||| |||| || || | || ||| Sbjct 1682008 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATAGTGTCACTGGGCTCAACT 1682067 Query 288427 TCGAGCGTGATCGTCTTCCC 288446 || | ||| || || || || Sbjct 1682068 TCCAACGTAATGGTTTTGCC 1682087 >seq3 Length=3518759 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 ||||| ||||| |||| || | ||| ||||| ||| || || ||||||| || Sbjct 2472428 CCGAATTGGCCACACGGCTCCAGCACGTTTATGTTGTTGGACCCAACGAAATCCTGCGCC 2472487 Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486 | ||| | ||||||| ||||| || |||||||| ||||| || ||| ||||| || Sbjct 2472488 ATGTTGATGATGGTCTGCTGCAGCGACGCTTCGCCGTGGTGGTACGCGGAGTGCTCGGCC 2472547 Query 325487 ACGTAACCGCTGAACTGTGCAACCTT-CACGTCGGTCGTCAAATTGCGCTTGAA--AGCT 325543 || || || | | ||| || ||||| ||| |||| ||| || || |||| | | Sbjct 2472548 ACATAGCCCGTCAGCTGCGCCACCTTGCAC-TCGGAGATCAGGTTCCGTTTGAGGCACCC 2472606 Query 325544 GAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGT 325603 ||| | ||| || || || ||||| | || || || || || || ||||| || Sbjct 2472607 GAACAG--CACCTTGCGCTGGCCGGGTTTCCACCCGTCGACCACGGAGGGGATGCTGCGC 2472664 Query 325604 TCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG 325652 ||| ||||| ||||| || || ||||||| ||||||||||| Sbjct 2472665 TCCGTGTCGTAGATGGAGAATTGGATGAGCTCCTTGTTGATGAAGTCGG 2472713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179647099782474