Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 89.7 1e-12 >seq3 Length=3518759 Score = 89.7 bits (98), Expect = 1e-12 Identities = 196/289 (68%), Gaps = 6/289 (2%) Strand=Plus/Plus Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 ||||| ||||| |||| || | ||| ||||| ||| || || ||||||| || Sbjct 2472428 CCGAATTGGCCACACGGCTCCAGCACGTTTATGTTGTTGGACCCAACGAAATCCTGCGCC 2472487 Query 297548 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 297607 | ||| | ||||||| ||||| || |||||||| ||||| || ||| ||||| || Sbjct 2472488 ATGTTGATGATGGTCTGCTGCAGCGACGCTTCGCCGTGGTGGTACGCGGAGTGCTCGGCC 2472547 Query 297608 ACGTAACCGCTGAACTGTGCAACCTT-CACGTCGGTCGTCAAATTGCGCTTGAA--AGCT 297664 || || || | | ||| || ||||| ||| |||| ||| || || |||| | | Sbjct 2472548 ACATAGCCCGTCAGCTGCGCCACCTTGCAC-TCGGAGATCAGGTTCCGTTTGAGGCACCC 2472606 Query 297665 GAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGT 297724 ||| | ||| || || || ||||| | || || || || || || ||||| || Sbjct 2472607 GAACAG--CACCTTGCGCTGGCCGGGTTTCCACCCGTCGACCACGGAGGGGATGCTGCGC 2472664 Query 297725 TCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG 297773 ||| ||||| ||||| || || ||||||| ||||||||||| Sbjct 2472665 TCCGTGTCGTAGATGGAGAATTGGATGAGCTCCTTGTTGATGAAGTCGG 2472713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873174896050