Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq1 131 2e-25 >seq1 Length=2541256 Score = 131 bits (144), Expect = 2e-25 Identities = 154/203 (76%), Gaps = 4/203 (2%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 ||||| |||||||| |||| |||||| ||| |||| | | ||||| |||| | || Sbjct 2427502 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACG-TTAAGGCCAA 2427560 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| |||||| | ||||| ||||| || |||| ||| ||||| || Sbjct 2427561 GATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAAGCA 2427620 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATT 38448 ||| || |||| ||||| ||| ||||||||||||||| ||||| ||| || || || Sbjct 2427621 GCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACC 2427679 Query 38449 TGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| || || | || ||| Sbjct 2427680 TGGTGCTCCGCCTGCGTGGTGGC 2427702 Score = 122 bits (134), Expect = 9e-23 Identities = 144/190 (76%), Gaps = 4/190 (2%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 ||||| |||||||| |||| |||||| ||| |||| | | ||||| |||| | || Sbjct 1682352 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACG-TTAAGGCCAA 1682294 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| || ||| | ||||| ||||| || || | || ||||| || Sbjct 1682293 GATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCA 1682234 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATT 38448 ||| || |||| ||||||||| ||||||||||||||| ||||| ||| || || || Sbjct 1682233 GCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACC 1682175 Query 38449 TGGTGCTGCG 38458 ||||||| || Sbjct 1682174 TGGTGCTCCG 1682165 Score = 120 bits (132), Expect = 3e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| | || ||||| | |||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 1847967 TTGTAGATGAAGCATCCGAAGTCGGCATGCAGCCCCTCATCCCTTGCGATGAGCTCGTTG 1848026 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 ||||| |||| || ||||| | ||||| || |||||||| || |||||| ||||||| Sbjct 1848027 CTGAACGTCAGCCCCGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTG 1848086 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACC 133041 ||||| ||||||| || || ||||| || |||| ||| Sbjct 1848087 CCCGAGAAGAAGATACCTTCAACGGCGGCATAAGCGACC 1848125 Score = 118 bits (130), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 ||||||||||| || | || || ||| ||| |||| | ||| |||| | || Sbjct 1682087 GGCAAAACCATTACGTTGGAAGTTGAGCCCAGTGACACTATCGAAAATGTTAAGGCCAAG 1682028 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 |||| ||||| ||||| || ||| | ||||| ||||| || |||| ||| ||||| ||| Sbjct 1682027 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAG 1681968 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATTT 38449 || || |||| ||||||||| ||||||||||||||| ||||| ||| || || || | Sbjct 1681967 CTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGC-ACCCTCCACCT 1681909 Query 38450 GGTGCTGCGTTTGAGAGGCGGC 38471 |||||| || || | || ||| Sbjct 1681908 GGTGCTCCGCCTGCGTGGTGGC 1681887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500169780206720