Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 205 1e-47 >seq5 Length=493739 Score = 205 bits (226), Expect = 1e-47 Identities = 741/1139 (65%), Gaps = 29/1139 (3%) Strand=Plus/Plus Query 111705 TTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAGT 111764 |||| |||||||| || || |||||| |||| || | ||| ||||||||||| ||| Sbjct 438300 TTCACACACGCAACTCCCACGCTCTTCTTTTCTGGAACTCAAAGGCCCCAAATGTCTAGT 438359 Query 111765 TGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAA 111824 || ||| | | | | ||||| ||||| | ||| || | || ||| | || || Sbjct 438360 TGCTTCTTGCTGGACATGAAGGATGATTCGCTGTCTGGAATATTCGACACGTTGACACAA 438419 Query 111825 TGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCC 111884 |||||| ||| ||||| |||||||| ||||| || ||| | |||| ||| Sbjct 438420 TGTGCCTTCATCAGCAAGTGCGCTGGTGGCATCGGCCTGTCGTGCCACAAAATCAGGGCC 438479 Query 111885 AACAAGTCTCGTA--TTAGAGGTACAAATGGTCA-ATCAGATGGTATTATTCCAATGCTT 111941 | | | | | || || | || ||||| ||| | | || | |||||| | || ||| | Sbjct 438480 AGC--GGCGCCTACATTCGCGGCACAAACGGTAAGAGCA-ACGGTATTGTGCCCATGTTG 438536 Query 111942 CGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCT 111998 || | ||||| || || |||||||| ||| |||||| ||| || |||||||| ||| Sbjct 438537 CGTATTTTTAATGCAACCGCGCGCTACGTAGACCAAGGTGGCGGTAAGCGCAAGGGCTCT 438596 Query 111999 ATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTC 112058 | || | || || ||||| |||||||| ||||||||||| || | || ||||| Sbjct 438597 TTTGCCATTTACCTGGAGCCGTGGCACGCTGATATCATGGACTTTTTGGATTTGCGCAAG 438656 Query 112059 AACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGAT 112118 || || || | ||||| | || || || || || | || ||||||||||| ||| Sbjct 438657 AATCACGGCGCGGAGGACACTCGCGCACGTGACCTGTTTTATGCGCTCTGGATTCCTGAT 438716 Query 112119 CTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGA-CAAGGC 112177 || ||||||||| | || || | | ||| ||||| | | | || || || || || Sbjct 438717 CTTTTCATGAAGCGTGTGGAAGCCAACGGCGATTGGACGTTGATGTGCCCGGATGAATGC 438776 Query 112178 ACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA 112237 | ||||| | ||| | | ||| || ||||| || | || || || |||||||| || Sbjct 438777 -CGTGGTCTTTACGAGGTCTGGGGAGACGAGTTCGAGGAGCTGTATACCAAGTACGA-GA 438834 Query 112238 AGAAAGTCGGGCGAC-TGCGACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAG 112295 || | | | | | | ||| | || || | | | | ||| || || ||| || Sbjct 438835 AGGCCGGCATGGGTCGTAAGACTATCCCTGC-CCAGTCGCTCTGGTTCGCCATACTCCAG 438893 Query 112296 TCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGT 112355 || | ||| || || || || | ||||| |||||||| || || ||| ||| Sbjct 438894 AGCCAGATCGAAACAGGAACTCCGTTCATGCTCTACAAAGATGCTTGCAACGCGAAGTCG 438953 Query 112356 AATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTT 112415 || ||| | || | || |||||| ||| || ||||| |||||| || | | Sbjct 438954 AACCAACAAAACCTTGGGACCATCAAGTCTTCAAATCTCTGCTGTGAAATCGTGCAGTAC 439013 Query 112416 ACAGACA-AAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT 112474 || | || ||||| || ||||| || || || || || || || || | |||||| Sbjct 439014 AC-GTCACCGGATGAAGTTGCGGTGTGCAATCTGGCTTCCATTGCGCTGCCTATGTATGT 439072 Query 112475 GGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCAC 112534 | | || || ||||| | ||| | | | |||||| |||| || | |||| Sbjct 439073 GAACAAGGAAACGAAGACTTATGACTTTAAGAAACTCTACGAGGTAGCCCGTGTCATCAC 439132 Query 112535 AAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAA 112591 | ||||| |||| | | ||||| || || | ||||| || ||| | | || Sbjct 439133 GTACAACCTCAACAAAATCATTGACAGGAACTACTACCCGGTACCAGAGGC-GAAGGT-- 439189 Query 112592 ATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT 112651 || || | ||||| || || ||| |||||||||| ||||| || || ||||| Sbjct 439190 GTCCAACCATCGCCACCGACCTATCGGTGTCGGTGTCCAGGGTCTGGCCGACACGTTCAT 439249 Query 112652 TCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGA 112711 || || || |||| || || || || || || || | ||| || || ||||| Sbjct 439250 GCTCATGCGGTACCCATTCGAGTCTGAGGAGGCCAAAGAGTTGAATCGTCGCATTTTTGA 439309 Query 112712 GACAATGTATCACGCCGCTCT---TGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCC 112768 ||||| || ||| ||| |||| | | ||| | |||| ||| ||||| || Sbjct 439310 AACAATCTACTACGGTTGTCTGGATGAGTCCATTTC---GCTGGCGGAGCGCGATGGCCC 439366 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 |||||| || | | || |||||||| ||||| || ||| || || || | |||| Sbjct 439367 ATATGAGACGTACCAAGGCTCTCCAGCATCACAGGGCAAGCTCCAGTTCGACCTTTGGG 439425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620738652267760