Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5 109 5e-19 >seq5 Length=493739 Score = 109 bits (120), Expect = 5e-19 Identities = 342/526 (65%), Gaps = 4/526 (1%) Strand=Plus/Minus Query 130409 TCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCTGTT 130468 || || ||||| | |||||||| || ||||| | ||||||| || || | || ||| Sbjct 439972 TCAACAGTGAACTTAATGGCATCAGTAGCCGGTTGCGTGCGCAGGTAGTAAACACCAGTT 439913 Query 130469 TTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGTTGC 130528 || | ||| | || || || ||| |||||| | | | | | || ||| Sbjct 439912 TTCAATCCTTTCTTCCACCCGTAGAAGTGCATGCTGGTGAGCTTACCGAACGTCGGCTGC 439853 Query 130529 GCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCCATG 130588 | | | ||||||| ||||||||||| || || || ||| || | ||| || |||||| Sbjct 439852 TCGATGTATATGTTAAGCGATTGCGACTGGTCGATGAAAATACCGCGGTCCGCCGCCATG 439793 Query 130589 TCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGTTTG 130648 |||| ||| | || | || ||||||||| | ||||||||||| || | ||||||| Sbjct 439792 TCGATAATGTTCTTTTGCTTGATCTCCCAAACTGTCTTGTATAGGTCTTTGATGTGTTGC 439733 Query 130649 GGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTAT-AATTTC-GTTGCGCATAC 130706 ||||| | | | || | || ||| || | ||| || |||||| ||| ||| Sbjct 439732 GGTATACCCTCGATGTGTCTAAGAGAACCATTATAGGCGATCAATTTCTGTT--TCATGT 439675 Query 130707 TTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGAA 130766 ||| || | | || || | || | ||| | | ||| |||| || | Sbjct 439674 TTTCGTCCCAAAGCCCCAGATCCACTAAATCGCGCAGGAGATGGGGGTTAACGACGAAGA 439615 Query 130767 AATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCGT 130826 | || ||| || || || | | ||| ||||| || ||| | || ||||| ||||||| Sbjct 439614 ACTCGCCACTGAGCACCCGGCGATAGTAGATGTTACTTGTGTATGGCTCAAAAGATTCGT 439555 Query 130827 TGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTAC 130886 |||| || | || |||| ||| | || || ||||| ||| | ||||| ||||| | Sbjct 439554 TGTTTCCAAGGATCTGTGATGTCGACGCAGTCGGCATAGGTGCGAGGAATAGCGAATTGC 439495 Query 130887 GAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCA 130932 | | ||||| | | || ||||| | || ||||||||||| Sbjct 439494 GCAATCCGTGTTTTGCCATGCGACGCTTAAGGTCGTCCCAATCCCA 439449 Score = 86.0 bits (94), Expect = 5e-12 Identities = 203/304 (67%), Gaps = 7/304 (2%) Strand=Plus/Minus Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACC 131674 || ||||| | || ||| ||||||| ||| || |||||||| || | ||| || | | Sbjct 438766 GGGCACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAAGATCAGGAATC 438707 Query 131675 CATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAA 131734 || | ||| || ||||| || | || | || || | || | | || |||| Sbjct 438706 CAGAGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCAAA 438647 Query 131735 TTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTG 131794 | |||||||||| || || || ||||| || |||| || | || | | ||| ||| Sbjct 438646 TCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCTTG 438587 Query 131795 CGCTTACCGCC---TTGATTAACATGACGAACCATGTTG--TTGTATACGCGCAACATGG 131849 ||||||||||| ||| | || | || | |||| || | | |||||||||| Sbjct 438586 CGCTTACCGCCACCTTGGTCTACGTAGCGCGCG--GTTGCATTAAAAATACGCAACATGG 438529 Query 131850 GCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTGGCTCTGATTT 131909 || | | ||||||| || || || |||| ||||||| ||| |||| ||||||| Sbjct 438528 GCACAATACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTT 438469 Query 131910 TGTG 131913 |||| Sbjct 438468 TGTG 438465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424931898597096