Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 307 1e-78 seq1 93.3 5e-14 >seq5 Length=493739 Score = 307 bits (340), Expect = 1e-78 Identities = 1136/1757 (65%), Gaps = 72/1757 (4%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 || |||| ||||| | || || || | || |||||||| ||||| | |||||| || Sbjct 439936 GTGCGCAGGTAGTAAACACCAGTTTTCAATCCTTTCTTCCACCCGTAGAAGTGCATGCTG 439877 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | ||||| | | |||| | ||| ||| | ||||| ||||| || |||||||||||| Sbjct 439876 GTGAGCTTACCGAACGTCGGCTGCTCGATGTATATGTTAAGCGATTGCGACTGGTCGATG 439817 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 | ||||||||| |||||||||||||| | ||||||| |||||||| | ||| Sbjct 439816 AAAATACCGCGGTCCGCCGCCATGTCGATAATGTTCTTTTGCTTGATCTCCCAAACTGTC 439757 Query 78370 CGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAGCGCT---TGTACGCTCCC----ACC 78422 ||| | | | || | | || | | || || || | | || | | | Sbjct 439756 TTGTATAGGTCTTTGATGTGTTGCGGTATACCCT-CGATGTGTCTAAGAGAACCATTATA 439698 Query 78423 GGCTCGCACAATTTCATTCTTAATTTGAGGGTTCCA--GCGATTGATCTTCTGAAGATCC 78480 ||| | ||||||| | || || | || ||| || |||| || || || Sbjct 439697 GGC--GATCAATTTCTGT-TTCATGTTTTCGTCCCAAAGCCCCAGATCCACTAAA--TCG 439643 Query 78481 CGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATG 78540 || | || || |||||| | || ||||||||| || |||||| ||||||| Sbjct 439642 CGCAGGAGATGGGGGTTAACGACGAAGAACTCGCCACTGAGCACCCGGCGATAGTAGATG 439583 Query 78541 TTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTC 78600 || | ||||| ||||| |||| |||||||| || | |||||| | ||||| || ||| Sbjct 439582 TTACTTGTGTATGGCTCAAAAGATTCGTTGTTTCCAAGGATCTGTGATGTCGACGCAGTC 439523 Query 78601 GGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCT-CGAC-CTTTA 78658 ||||| ||||||| | ||| ||||| || | || || | ||| | |||| ||| | Sbjct 439522 GGCATAGGTGCGAGGAATAGCGAATTGCGCAATCCGTG--TTTTGCCATGCGACGCTTAA 439465 Query 78659 GGCCGTCCCAA------AATTCATTCGCCGCGATC---CCCCACATGTCCGGTTGAAGGA 78709 || |||||||| |||| ||| || | | ||||| | ||| || || Sbjct 439464 GGTCGTCCCAATCCCACAATTTATTATCCACAGTAGCGCCCCAAAGGTCGAACTGGAGCT 439405 Query 78710 TACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTT 78769 | |||| || || || || || | | ||||||| || | || || || || || Sbjct 439404 TGCCCTGTGATGCTGGAGAGCCTTGGTACGTCTCATATGGGCCATCGCGCTCCGCCAG-- 439347 Query 78770 CGCAT--GACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 || | ||||| ||| ||| ||| | | || || |||| || | ||| Sbjct 439346 CGAAATGGACTCATCCAGACAACCGTAGTAGATTGTTTCAAAAATGCGACGATTCAACTC 439287 Query 78828 GCGCGCCTTGGTCTCGTCGAAC--GAAAGG---CCG-AGCATCATGAAGACATCGGCCAG 78881 |||| ||| || || ||| || ||| | | |||||| |||||||| Sbjct 439286 T------TTGGCCTCCTCAGACTCGAATGGGTACCGCATGAGCATGAACGTGTCGGCCAG 439233 Query 78882 GCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGTTG--CTCTTTCGGGCCGCCTC- 78938 |||||||| |||| | |||| ||||||||||| |||| | | |||| |||| Sbjct 439232 ACCCTGGACACCGACACCGATAGGTCGGTGGCGATGGTTGGACACCTTCG-----CCTCT 439178 Query 78939 GGT--CGGGTAAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTC 78996 ||| |||||| |||||| || |||| ||| ||||| ||||| ||| || | Sbjct 439177 GGTACCGGGTAGTAGTTCCTGTCAATGATTTTGTTGAGGTTGTACGTGATGACACGGGCT 439118 Query 78997 ACCTCGTACAATTTGGCGAAATCAAAA----TGATTTCCTTTGATGAAAGTCGGTAGGCA 79052 |||||||| | ||| || ||| || | ||||||| | | | | | |||||| Sbjct 439117 ACCTCGTAGAGTTTCTTAAAGTCATAAGTCTTCGTTTCCTT-GTTCACATACA-TAGGCA 439060 Query 79053 CAGCGATG----CCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTT 79108 || ||| |||| |||||||| || || ||||| | || | ||||| Sbjct 439059 GCGCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGACGTGTACTGCACGATTT 439000 Query 79109 CTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTAC 79168 | ||| | ||| || ||||||||||| || | ||| | ||||| |||| |||| | Sbjct 438999 CACAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTGGTTCGACTTCGCGTTGC 438940 Query 79169 AGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGT 79228 | || || |||||| |||| |||| || || || || | ||| |||| ||| | | || Sbjct 438939 AAGCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTGGCTCTGGAGTATGGCGA 438880 Query 79229 CCCAGATGTCCCGGGCCCGGACAACCTT----CTTGTACCGACCCTGTGCGACGTACGTC 79284 ||||| | |||| ||| | ||| | | ||| || | | ||||| | Sbjct 438879 ACCAGAGCGACTGGGCAGGGATAGTCTTACGACCCATGCCGGCCTTCT----CGTACTTG 438824 Query 79285 CGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGG 79344 |||| ||| | ||| | || || |||| ||| || || |||| || | |||| Sbjct 438823 GTATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCACGGCATTCATCCGGG 438764 Query 79345 CACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCAC 79404 ||||||| ||| || ||| || || || |||||| || || || ||||| Sbjct 438763 CACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAAGATCAGGAATCCAG 438704 Query 79405 AGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCG 79464 || || || ||||| || || | ||||| |||| || ||| |||| || Sbjct 438703 AGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCAAATCC 438644 Query 79465 AGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGC 79524 | |||||||||||| || ||||||||||||||||| || ||||| || || ||||||||| Sbjct 438643 AAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCTTGCGC 438584 Query 79525 TTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACG 79584 || ||||| || |||| ||||| || || || || |||| || | ||||||||| Sbjct 438583 TTACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACA 438524 Query 79585 ATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAG 79644 || |||| | ||||| || ||| || | ||||| |||| || || | Sbjct 438523 ATACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGG 438464 Query 79645 CAGTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 || | |||||||| || | |||||| |||| || || | | | ||| ||| Sbjct 438463 CACGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCG 438404 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 | || || | ||| || |||||||| | | || |||||| || ||||| || || Sbjct 438403 AATATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAGCAACTAGACATTTGGGGC 438344 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 | | || || | |||||| || || || ||||| ||||| | || ||||||||| Sbjct 438343 CTTTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTGAAATATTTCTGGCTCATC 438284 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 | | ||||||| || ||| ||| ||| ||| ||| || || ||| || ||| Sbjct 438283 AAGTGATACGTCTGGATGGTGCGTTCGAGATCGCCGCAGTGTATACCCGCCGAAACACGC 438224 Query 79885 ATGAAGAGGTACTGGGG 79901 |||| | || ||| || Sbjct 438223 ATGAGCATGTGCTGTGG 438207 Score = 242 bits (268), Expect = 4e-59 Identities = 1123/1754 (64%), Gaps = 66/1754 (4%) Strand=Plus/Plus Query 19103 CCTCAGTACCTTTTCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTC 19162 || ||| || | ||||||| || ||| || || || ||| ||| ||| || | Sbjct 438207 CCACAGCACATGCTCATGCGTGTTTCGGCGGGTATACACTGCGGCGATCTCGAACGCACC 438266 Query 19163 CGCGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTC 19222 | |||| || || ||||||||||||| | ||||| ||||| || || || || ||| Sbjct 438267 ATCCAGACGTATCACTTGATGAGCCAGAAATATTTCACACACGCAACTCCCACGCTCTTC 438326 Query 19223 AACGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGAC 19282 | || || | | || || ||||| || || ||| | ||| ||||||||||| Sbjct 438327 TTTTCTGGAACTCAAAGGCCCCAAATGTCTAGTTGCTTCTTGCTGGACATGAAGGATGAT 438386 Query 19283 AGCATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGG 19342 | || || | ||| ||| | | | || || |||| |||||| | || Sbjct 438387 TCGCTGTCTGGAATATTCGACACGTTGACACAATGTGCCTTCATCAGCAAGTGCGCTGGT 438446 Query 19343 GGTATCGGGATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAAC 19402 || ||||| | ||| || ||| || | || || | || || || ||| Sbjct 438447 GGCATCGGCCTGTCGTGCCACAAAATCAGGGCCAGCGGCGCCTACATTCGCGGCACAAAC 438506 Query 19403 GG-AGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGT 19461 || | ||| ||||||| || || ||| | || | || || || || | ||||| Sbjct 438507 GGTAAGAGCA-ACGGTATTGTGCCCATGTTGCGTATTTTTAATGCAACCGCGCGCTACGT 438565 Query 19462 CAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGC 19521 |||| || ||||| || ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 438566 AGACCAAGGTGGCGGTAAGCGCAAGGGCTCTTTTGCCATTTACCTGGAGCCGTGGCACGC 438625 Query 19522 GGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCG 19581 || ||||||| || | || ||||| ||| || || | ||||| | ||| || Sbjct 438626 TGATATCATGGACTTTTTGGATTTGCGCAAGAATCACGGCGCGGAGGACACTCGCGCACG 438685 Query 19582 CGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGA 19641 ||||| || || | |||||||| || || |||||| || || || ||| Sbjct 438686 TGACCTGTTTTATGCGCTCTGGATTCCTGATCTTTTCATGAAGCGTGTGGAAGCCAACGG 438745 Query 19642 AGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGC 19701 || ||| ||||||||||| | ||||||| ||| || ||| |||| || || | Sbjct 438746 CGATTGGACGTTGATGTGCCCGGATGAATGCCGTGGTCTTTACGAGGTCTGGGGAGACGA 438805 Query 19702 GTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAG------AAGGTGGT 19755 |||| | ||| |||| | |||| || | |||||| || | ||| | Sbjct 438806 GTTCGAGGAGCTGTATACCAAGTACG-AG---AAGGCCGG--CATGGGTCGTAAGACTAT 438859 Query 19756 CCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTA 19815 || |||| | ||||| | | | ||| | |||||| |||| || || || |||| Sbjct 438860 CCCTGCCCAGTCGCTCTGGTTCGCCATACTCCAGAGCCAGATCGAAACAGGAACTCCGTT 438919 Query 19816 CATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAA 19875 |||| |||||| || || ||||| ||||| || || | ||| | || | ||||| Sbjct 438920 CATGCTCTACAAAGATGCTTGCAACGCGAAGTCGAACCAACAAAACCTTGGGACCATCAA 438979 Query 19876 GTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAG---CCGGACGAGACTGCCGT 19932 ||| || || || || ||||||| || || | || | ||||| || ||| || Sbjct 438980 GTCTTCAAATCTCTGCTGTGAAATCGTGCAG---TACACGTCACCGGATGAAGTTGCGGT 439036 Query 19933 GTGTAATCTGGCGTCCCTGTGC-CTGCCGACTTTCGT---CAAGG---CCTCCTCCTTCG 19985 ||| |||||||| ||| | ||| ||||| | | || ||||| | | | | Sbjct 439037 GTGCAATCTGGCTTCCAT-TGCGCTGCCTATGTATGTGAACAAGGAAACGAAGACTTATG 439095 Query 19986 ACTTTGCCAAATTGTACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCG 20045 ||||| ||| | |||||||| |||| ||| ||||| || || || |||| | Sbjct 439096 ACTTTAAGAAACTCTACGAGGTAGCCCGTGTCATCACGTACAACCTCAACAAAATCATTG 439155 Query 20046 ATCGGAACTTTTACCCG--ACC-GAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGA 20102 | |||||| |||||| ||| |||||| | ||| || |||||||| || | Sbjct 439156 ACAGGAACTACTACCCGGTACCAGAGGCGAAG---GTGTCCAACCATCGCCACCGACCTA 439212 Query 20103 TCGCGATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACG 20162 ||| |||| |||||||| ||||||||| |||||| | | | | ||||||| Sbjct 439213 TCGGTGTCGGTGTCCAGGGTCTGGCCGACACGTTCATGCTCATGCGGTACCCATTCGAGT 439272 Query 20163 ATCCCAAGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCC 20222 | |||| ||| | || |||| || || | | ||| | ||| | | Sbjct 439273 CTGAGGAGGCCAAAGAGTTGAATCGTCGCATTTTTGAAACAATCTACTA--CGGTTGT-C 439329 Query 20223 TGGAATCGTGCGAACTCGC---CAAAGAG-GACGGCCCGTACGAGACGTTCAAGGGGTCG 20278 |||| || | | |||| | || | || ||||| || ||||||| | | || || Sbjct 439330 TGGATGAGT-CCATTTCGCTGGCGGAGCGCGATGGCCCATATGAGACGTACCAAGGCTCT 439388 Query 20279 CCCGCGTCCGAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACT---GAGAATGAGTT- 20334 || || || |||| | |||||| ||| | ||||||| ||| || ||| | || Sbjct 439389 CCAGCATCACAGGGCAAGCTCCAGTTCGACCTTTGGGGCGCTACTGTGGATAATAAATTG 439448 Query 20335 -----TTGGAGCGCCCTCAAG-GTTG-AGATCAAGACCCACGGGCTTCGCAACTCGTTGC 20387 |||| || ||| ||| || | | ||| | ||||| | ||||| ||| | Sbjct 439449 TGGGATTGGGACGACCTTAAGCGTCGCATGGCAAAA--CACGGATTGCGCAATTCGCTAT 439506 Query 20388 TCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCG 20447 || |||| || |||||||| || ||||| | |||||| | || |||||||| |||| | Sbjct 439507 TCCTCGCACCTATGCCGACTGCGTCGACATCACAGATCCTTGGAAACAACGAATCTTTTG 439566 Query 20448 AGCCGTACACGACCAACATCTACTTGCGTCGTACACTGGCCGGTGAGTTCGTCATGGTAA 20507 |||| ||||| | |||||||||| || || || || |||||| || | || | Sbjct 439567 AGCCATACACAAGTAACATCTACTATCGCCGGGTGCTCAGTGGCGAGTTCTTCGTCGTTA 439626 Query 20508 ACAAGCACCTGGTCCGCGACTTGCAGAAGATC--GATATGTGGTCGCCCAAAA-TTAAGA 20564 || || || | ||||| || || |||| | | ||| | | |||| | | | Sbjct 439627 ACCCCCATCTCCTGCGCGATTT--AGTGGATCTGGGGCTTTGG--GACGAAAACATGAAA 439682 Query 20565 ATGAAATTGTCCGAGCCGGCGGGAGCGTCCAGGCA----TTGGATATCCCCCAGAACCTC 20620 ||||||| || || | || || || ||| || || || || Sbjct 439683 CAGAAATTGATCGCCTATAATGGTTCTCTTAGACACATCGAGGGTATACCGCAACACATC 439742 Query 20621 AAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCATCATCGACATGGCGGCC 20680 || ||| | |||| ||| || ||||| ||| || |||| ||| |||||||||||||| Sbjct 439743 AAAGACCTATACAAGACAGTTTGGGAGATCAAGCAAAAGAACATTATCGACATGGCGGCG 439802 Query 20681 GATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGC 20740 || ||||| | |||||||||||| || ||||| || | | ||| ||| | |||| Sbjct 439803 GACCGCGGTATTTTCATCGACCAGTCGCAATCGCTTAACATATACATCGAGCAGCCGACG 439862 Query 20741 CTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGGCACAAGGGGCTCAAGACGGGCATG 20800 | | ||||| | | |||||| | ||||| ||| | || || | || || || | Sbjct 439863 TTCGGTAAGCTCACCAGCATGCACTTCTACGGGTGGAAGAAAGGATTGAAAACTGGTGTT 439922 Query 20801 TACTATCTGCGGAC 20814 ||||| ||||| || Sbjct 439923 TACTACCTGCGCAC 439936 >seq1 Length=2541256 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 |||| ||| ||| ||||| ||||||||||| ||| ||||| || || ||||||||| Sbjct 1848121 GCTTATGCCGCCGTTGAAGGTATCTTCTTCTCGGGCAGTTTCTGCGCCATCTTCTGGCTC 1848062 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||||| || | |||||||| |||| ||| ||||||||| || | |||| ||| Sbjct 1848061 AAGAAGCGCGGTTTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCGCAAGGGATGAG 1848002 Query 60111 GGCCTCCAT 60119 || || ||| Sbjct 1848001 GGGCTGCAT 1847993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548521488281520