Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5 253 2e-62 seq3 132 5e-26 seq1 131 2e-25 >seq5 Length=493739 Score = 253 bits (280), Expect = 2e-62 Identities = 697/1058 (66%), Gaps = 25/1058 (2%) Strand=Plus/Minus Query 80709 CATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTT 80768 ||| | ||||||| ||| ||||| ||||| || |||| |||| || |||||||| | Sbjct 439256 CATGAGCATGAACGTGTCGGCCAGACCCTGGACACCGACACCGATAGGTCGGTGGCGATG 439197 Query 80769 GTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 ||| || || ||||| || | ||||| |||| | || |||| ||| ||||| Sbjct 439196 GTTGGACACCTTCGCCTCTGGTACCGGGTAGTAGTTCCTGTCAATGATTTTGTTGAGGTT 439137 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA----TTGGTTCCCCT 80884 | || | || || | || || | ||||||| |||||| | || ||| || | Sbjct 439136 GTACGTGATGACACGGGCTACCTCGTAGAGTTTCTTAAAGTCATAAGTCTTCGTTTCCTT 439077 Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 ||||| | || || | ||| |||||||||||||| || || || || | Sbjct 439076 GTTCACATACATAGGCAGCGCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGA 439017 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 || ||| |||||||| ||| | ||| |||||||| || || || ||||||| || Sbjct 439016 CGTGTACTGCACGATTTCACAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTG 438957 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||||| ||||||||||| || |||||| |||| |||| || || || |||| ||| Sbjct 438956 GTTCGACTTCGCGTTGCAAGCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTG 438897 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 || ||| |||||| ||| | | | || || ||| || |||| | Sbjct 438896 GCTCTGGAGTATGGCGAACCAGAGCGACTGGGCAGGGATAGTCTTACGACCCATGCCGGC 438837 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTG 81181 | | ||||||| || ||| || ||||||| | | || | || || | Sbjct 438836 CTTCTCGTACTTGGTATACAGC-TCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCAC 438778 Query 81182 GGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAG 81241 |||| || | |||||||||| ||| ||| || | || ||| |||||||||| Sbjct 438777 GGCATTCATCCGGGCACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAA 438718 Query 81242 CGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGT 81301 ||||| |||||||| || |||||||| || ||| | ||||| | || || | Sbjct 438717 GATCAGGAATCCAGAGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGAT 438658 Query 81302 TGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA 81361 | |||||| || | |||||||||||| || || ||||| |||||||| || | ||| | Sbjct 438657 TCTTGCGCAAATCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAA 438598 Query 81362 TCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACAC 81418 || |||||||| || |||||| |||| ||||| || || || || ||||| | || Sbjct 438597 AAGAGCCCTTGCGCTTACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAAATAC 438538 Query 81419 GCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGA---TACGCGACCCCT 81475 ||||||| || | ||||| | || |||||| || || ||| || ||| || Sbjct 438537 GCAACATGGGCACAATACCGTTGCTCTTACCGTTTGT-GCCGCGAATGTAGGCG--CCGC 438481 Query 81476 TGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTT--TGAAATCTGA-- 81531 |||| | | ||| | || || ||||||||||| | ||||| ||| ||| Sbjct 438480 TGGCCCTGATTTTGTGGCACGACAGGCCGATGCCACCAGCGCACTTGCTGA----TGAAG 438425 Query 81532 GCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAG 81591 ||||| | ||| || || | ||||| | ||| | |||||||| |||||| Sbjct 438424 GCACATTGTGTCAACGTGTCGAATATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAG 438365 Query 81592 AAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGA 81651 || || || ||||| || || |||| | || | | ||| || || || || ||||| Sbjct 438364 AAGCAACTAGACATTTGGGGCCTTTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGT 438305 Query 81652 ATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCG 81711 ||||||| | ||||| || ||| || | || |||| | |||| | | | Sbjct 438304 GTGAAATATTTCTGGCTCATCAAGTGATACGTCTGGATGGTGCGTTCGAGATCGCCGCAG 438245 Query 81712 TGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || ||||| | |||||||| | ||||| ||| || Sbjct 438244 TGTATACCCGCCGAAACACGCATGAGCATGTGCTGTGG 438207 >seq3 Length=3518759 Score = 132 bits (146), Expect = 5e-26 Identities = 184/256 (72%), Gaps = 14/256 (5%) Strand=Plus/Minus Query 32002 CAGCGCAAGGTGATATACGCCTGCCTCAAGAAGAACCTGT----CGAGTGACATGAAGGT 32057 |||||||||||| | | || |||||||| ||||||| |||||| ||||| Sbjct 2472624 CAGCGCAAGGTGCTGTTCGGGTGCCTCAAACGGAACCTGATCTCCGAGTGC----AAGGT 2472569 Query 32058 GGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCT 32117 |||||||||| ||||||| ||||| ||||| | || || ||||||||||| |||||||| Sbjct 2472568 GGCGCAGCTGACGGGCTATGTGGCCGAGCACTCCGCGTACCACCACGGCGAAGCGTCGCT 2472509 Query 32118 CCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACT 32177 ||| ||||| ||||| | || ||| | || || || | || ||| | ||| | || Sbjct 2472508 GCAGCAGACCATCATCAACATGGCGCAGGATTTCGTTGGGTCCAACAACATAAACGTGCT 2472449 Query 32178 CGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGC---TGCGAGCTC 32234 ||||| | ||| || || || | ||| | || |||||||| || |||| | Sbjct 2472448 GGAGCCGTGTGGCCAATTCGGCAGCCGCAAGGAGGGCGGCAAGGACGCCTCTGCGG---C 2472392 Query 32235 CCGTTACATCTTCACC 32250 ||||||||||||||| Sbjct 2472391 GCGTTACATCTTCACC 2472376 >seq1 Length=2541256 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || || ||||| ||| | |||| | || | ||| | ||||| || Sbjct 1682352 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACGTTAAGGCCAAG 1682293 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| || || || |||||||||||||| || |||||||| ||||| Sbjct 1682292 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCAG 1682233 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 |||||||| | || ||||| | ||||| || |||| ||||| ||| || || || Sbjct 1682232 CTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTG 1682173 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || || ||||| Sbjct 1682172 GTGCTCCGCCTGCGTGGTGG 1682153 Score = 131 bits (144), Expect = 2e-25 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || || ||||| ||| | |||| | || | ||| | ||||| || Sbjct 2427502 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACGTTAAGGCCAAG 2427561 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| ||||| || |||||||||||||| ||||| ||||| ||||| Sbjct 2427562 ATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAAGCAG 2427621 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 |||||||| | || || || | ||||| || |||| ||||| ||| || || || Sbjct 2427622 CTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTG 2427681 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || || ||||| Sbjct 2427682 GTGCTCCGCCTGCGTGGTGG 2427701 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 ||||| || ||||| | || |||||| | |||| | || | |||| | ||||| || Sbjct 1682087 GGCAAAACCATTACGTTGGAAGTTGAGCCCAGTGACACTATCGAAAATGTTAAGGCCAAG 1682028 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 || |||||||||||||| || || || |||||||||||||| ||||| || || ||||| Sbjct 1682027 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAG 1681968 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTA 27612 |||||||| | || ||||| | ||||| || |||| ||||| ||| || || || Sbjct 1681967 CTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTG 1681908 Query 27613 GTCTTGCGTCTTCGCGGTGG 27632 || | || || || ||||| Sbjct 1681907 GTGCTCCGCCTGCGTGGTGG 1681888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570306956750960