Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 >seq1 Length=2541256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || |||||||| || || || || || |||| || || || | Sbjct 1682164 GCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 1682223 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| ||||| || |||||||||||||| | ||| | || ||| || Sbjct 1682224 GTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 1682283 Query 39189 GTCCATGAtttt 39200 |||| ||| || Sbjct 1682284 GTCCTGGATCTT 1682295 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || |||||||| || || || || || |||| || || || | Sbjct 1681899 GCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCC 1681958 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || |||||||||||||| | ||| | || ||| || Sbjct 1681959 GTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTT 1682018 Query 39189 GTCCATGAtttt 39200 |||| ||| || Sbjct 1682019 GTCCTGGATCTT 1682030 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || |||||||| || || || || || |||| || || || | Sbjct 2427690 GCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCC 2427631 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || |||||||||||||| | ||| | || ||| || Sbjct 2427630 GTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTT 2427571 Query 39189 GTCCATGAtttt 39200 |||| ||| || Sbjct 2427570 GTCCTGGATCTT 2427559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429543071452979