Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1 165 2e-35 seq3 98.7 2e-15 >seq1 Length=2541256 Score = 165 bits (182), Expect = 2e-35 Identities = 157/201 (78%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||||||||| || ||||| || | ||||| || || |||||||||||||| | Sbjct 1682152 ACCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGA 1682211 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || |||||||| ||||| || || || || |||||||||| ||| || ||||| || Sbjct 1682212 GAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGG 1682271 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| || || ||| | ||||||||||| | ||||| Sbjct 1682272 GATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCGAC 1682331 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 ||||| ||||| ||||| || Sbjct 1682332 CTCGAGCGTGATGGTCTTGCC 1682352 Score = 158 bits (174), Expect = 3e-33 Identities = 155/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||||| || || |||||||||||||| | Sbjct 2427701 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 2427642 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || || || || |||| ||| || ||||| ||| Sbjct 2427641 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGA 2427582 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||||||||| | ||||| Sbjct 2427581 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCGACC 2427522 Query 283053 TCGAGAGTGATCGTCTTACC 283072 ||||| ||||| ||||| || Sbjct 2427521 TCGAGCGTGATGGTCTTGCC 2427502 Score = 140 bits (154), Expect = 7e-28 Identities = 131/167 (78%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||||||| || ||||| || | ||||| || || |||||||||||||| | Sbjct 1681888 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAG 1681947 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| || || || ||||| || |||| ||| || ||||| || Sbjct 1681948 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGG 1682007 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 || ||||||||||| |||||||| || || || | ||||||||||| Sbjct 1682008 ATGCCCTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATAGTGTC 1682054 >seq3 Length=3518759 Score = 98.7 bits (108), Expect = 2e-15 Identities = 181/261 (69%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 273857 GTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGA 273916 ||||||||||||| || ||| ||||||| ||||| || | ||| ||| ||| || || Sbjct 2472454 GTTTATGTTGTTGGACCCAACGAAATCCTGCGCCATGTTGATGATGGTCTGCTGCAGCGA 2472513 Query 273917 TACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTT 273976 | ||||||||||| || ||| ||| ||||| | ||| || | | ||| || ||||| Sbjct 2472514 CGCTTCGCCGTGGTGGTACGCGGAGTGCTCGGCCACATAGCCCGTCAGCTGCGCCACCTT 2472573 Query 273977 -CACATCGCTCGTCAAGTTTCGCTTGA--ATGCGGAATACAACACCTTCCGCTGCGAGGG 274033 ||| ||| ||| ||| || |||| | || ||| |||||| ||||| ||| Sbjct 2472574 GCAC-TCGGAGATCAGGTTCCGTTTGAGGCACCCGA--ACAGCACCTTGCGCTGGCCGGG 2472630 Query 274034 CTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAATCATACCGAGAGAACAAAAT 274093 || |||| || || || || || || ||||| ||| || || ||||| || Sbjct 2472631 TTTCCACCCGTCGACCACGGAGGGGATGCTGCGCTCCGTGTCGTAGATGGAGAATTGGAT 2472690 Query 274094 CAGTTCCTTGTCAATGAAGTC 274114 || ||||||| |||||||| Sbjct 2472691 GAGCTCCTTGTTGATGAAGTC 2472711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046732722319882