Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000723445.1_202014-06-26] 483 sequences; 13,840,936 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 >seq1 Length=2541256 Score = 109 bits (120), Expect = 1e-18 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACA 178003 |||| || || ||||| |||||||| || || ||| |||| ||||| ||||| || Sbjct 1682354 CAGGCAAGACCATCACGCTCGAGGTCGA--GCCCAGTGACACTATCGAAAACGTTAAGGC 1682297 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| |||||||| || || ||||| ||||||||||| || || ||||| || || || Sbjct 1682296 CAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAA 1682237 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||| || || | || || |||| || ||| |||| || || Sbjct 1682236 GCAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1682189 Score = 109 bits (120), Expect = 1e-18 Identities = 126/168 (75%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 177946 CAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACA 178003 |||| || || ||||| |||||||| || || ||| |||| ||||| ||||| || Sbjct 2427500 CAGGCAAGACCATCACGCTCGAGGTCGA--GCCCAGTGACACTATCGAAAACGTTAAGGC 2427557 Query 178004 AAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 ||||| |||||||| || || || || ||||||||||| || || || ||||| || || Sbjct 2427558 CAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAA 2427617 Query 178064 ACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||| || || | ||||| |||| || ||| |||| || || Sbjct 2427618 GCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGA 2427665 Score = 93.3 bits (102), Expect = 1e-13 Identities = 122/167 (73%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 177947 AGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAA 178004 ||| ||||| || || | || || || || ||| |||| ||||| || || || Sbjct 1682088 AGGCAAAACCATTACGTTGGAAGTTGA--GCCCAGTGACACTATCGAAAATGTTAAGGCC 1682031 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||| ||||||||||| || || || |||||||| || Sbjct 1682030 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAG 1681971 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGA 178111 |||||||| || || | || || |||| || ||| |||| || || Sbjct 1681970 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGA 1681924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203723750784702