Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 >seq5 Length=493739 Score = 165 bits (182), Expect = 1e-35 Identities = 732/1145 (64%), Gaps = 32/1145 (3%) Strand=Plus/Minus Query 53515 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 53574 ||| || |||| ||| || | || || ||||| | ||||||||||| || | | || Sbjct 439253 GAGCATGAACGTGTCGGCCAGACCCTGGACACCGACACCGATAGGTCGGTGGCGATGGTT 439194 Query 53575 AGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 || | | || ||||| | || || || || | || || ||||| |||||||| Sbjct 439193 GGACACCTTCGCCTCTGGTACCGGGTAGTAGTTCCTGTCAATGATTTTGTTGAGGTTGTA 439134 Query 53635 GACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCA-AATTGTCCATCTATT---- 53689 || || | | || || | ||||| ||| ||| || | | | | | | Sbjct 439133 CGTGATGACACGGGCTACCTCGTAGAGTTTCTTAAAGTCATAAGTCTTCGTTTCCTTGTT 439074 Query 53690 -ACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 53748 ||| |||| || ||||| || |||||||| || || || || |||| | || Sbjct 439073 CACATACATAGGCAGCGCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGACGT 439014 Query 53749 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 53808 || || | || ||| ||| ||||| | |||||||||| || | |||||||| || Sbjct 439013 GTACTGCACGATTTCACAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTGGTT 438954 Query 53809 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGA 53868 ||| ||| || ||||| || || || ||||| || || || ||||| |||||| Sbjct 438953 CGACTTCGCGTTGCAAGCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTGGCT 438894 Query 53869 TTCTATAATCGCTTTCCAGA-CGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT- 53926 | | || || ||||| |||| | || || || || | | | | Sbjct 438893 CTGGAGTATGGCGAACCAGAGCGACTGG-GCAGGGAT---AGTCTTACGACCCATGCCGG 438838 Query 53927 -CTT-TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 ||| ||||| ||||||| || |||||||||||||| || | || | ||| Sbjct 438837 CCTTCTCGTACTTGGTATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCAC 438778 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 | ||||||||||| |||||||||| ||| || |||| | | ||| || ||||| || | Sbjct 438777 GGCATTCATCCGGGCACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAA 438718 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104 ||||||||||||| || || ||| || || | | | | ||||| || || Sbjct 438717 GATCAGGAATCCAGAGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGAT 438658 Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164 |||| | ||| | || |||| ||||||| |||||||| |||| ||| |||| || Sbjct 438657 TCTTGCGCAAATCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGG-CA 438599 Query 54165 TAACTCCAGGCCGTTTGTTT----CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 54220 || || || | | || || || || |||| ||| | ||||| |||| || Sbjct 438598 AAA---GAGCCCTTGCGCTTACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAA 438542 Query 54221 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 54280 | | |||||| || | |||||| ||| ||| || || ||| || ||| || Sbjct 438541 ATACGCAACATGGGCACAATACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCG 438482 Query 54281 CTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 ||||| | || || || || || || || || || || ||| || || Sbjct 438481 CTGGCCCTGATTTTGTGGCACGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCA 438422 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 ||| || | ||||| || | || || | ||||||| |||||| || | || Sbjct 438421 CATTGTGTCAACGTGTCGAATATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAG 438362 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||||||||||| | | |||||| | | || | || |||| ||||| || Sbjct 438361 CAACTAGACATTTGGGGCCTTTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTG 438302 Query 54461 AACCATTT----TTCAGAAAGTAGATTGTACGTCTCGATAGCTGAG-TCTATATCCCATT 54515 || |||| ||| |||| || ||||||| ||| | || | || | ||| | Sbjct 438301 AAATATTTCTGGCTCATCAAGT-GA---TACGTCTGGAT-GGTGCGTTCGAGATCGCCGC 438247 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 || || || | | |||||||| | ||||||||| || | |||||| || |||| || Sbjct 438246 AGTGTATACCCGCCGAAACACGCATGAGCATGTGCTGTGGACGTTCAACAATTTTGTCGT 438187 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 || ||| | ||||||| |||||||||||| | ||| || || | ||| |||| Sbjct 438186 CGATGCGCAGAAGGTAGGATCGTTCCAAAGTTTTCAGACCGAAGTAATCATATTGGAAGT 438127 Query 54636 CTCGT 54640 | ||| Sbjct 438126 CCCGT 438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718015405840