Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq14 486 6e-133 >seq14 Length=3228 Score = 486 bits (538), Expect = 6e-133 Identities = 1178/1756 (67%), Gaps = 36/1756 (2%) Strand=Plus/Plus Query 22536 GGTAATCCGGCGGTATTCATGCAGCGGTTCACGATATTACGGTCGATGCCCTCTGCTTCA 22595 || ||| |||||| || || |||||| | | || ||||| || || || ||| Sbjct 347 GGCAATTTGGCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCA 406 Query 22596 GCCAGGGCTTTAACGTTACCATCAAATTCTTTCAG---TCGGC--GCAAGTACCGTTTCC 22650 ||||| || || || ||| ||||||| ||| | ||||| ||| || || | | Sbjct 407 GCCAGCGCAGAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCA--TAACGCTGAC 464 Query 22651 CGCGTTCGTATGCACTGGTTGGCCGATAGTCGTTACCCAA-CTGTGACAACTGCTGC-AT 22708 | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||| || || Sbjct 465 CACGTTCATAAGCACTTGTTGGGCGATAATCGTTACCCAATCTG-GATAA-TGCAGCCAT 522 Query 22709 TTGTTCATCATCCAGCTCTCCAACGAGAACCCGATAATCGCTACCAGTGATGATGGCTGT 22768 || |||||||||||||| ||||| ||||| |||||||| || | || | || | Sbjct 523 CTGCTCATCATCCAGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGC 582 Query 22769 TTTGCGGCGGCGTGAGCCATCGGCAATTTCGATAATGCCTGACGTCCTTCTGGCGAACGC 22828 ||| || ||||| |||||||||||||| || | || || |||| ||||||| Sbjct 583 TTTACGACGGCGACTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGC 642 Query 22829 GGGGTTCTGCTGTCCTGA-AGTGAGGAATGAAGGGATAAGGTCGGCCAGCGCTGATTCGT 22887 || |||| || || | ||| || || |||||||| || || |||| || || Sbjct 643 CGGTGTCTGTTGACCAGTCAGT-AGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAG 701 Query 22888 TCAGCAATTCCTGATCACGTTCATTACCGAGCCAAACCATTGTGGCCTTTTCGACTTTAT 22947 | |||| ||||| |||||||||||||| ||| ||| | || ||| || || ||| Sbjct 702 TAAGCAGCTCCTGGTCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTAT 761 Query 22948 CAGCAGGAATGGTTTCCAGCTTAAAAGTCACGTTGCGGCCGCAAACCGGTAGCGTAATGC 23007 || | | | ||| || |||| |||| | || || || || || | |||||| Sbjct 762 CACCCCGGAGCACTTCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGG 821 Query 23008 TATTCCCGGACAACGAACTTAATTTGCTCTGTAAGTCGC-CAACCATCGGCGAAACCGAT 23066 ||| ||| ||| | || ||| || | ||| ||| | || ||| Sbjct 822 CATTACCG-----CGAGCCA---TTACTCC-TACG-CGCGCAATTAACGAATCCACCATC 871 Query 23067 GGCGCTTTTTGCGGCGCATTATGGTTATTGCTCATGAACGTTTCGATGTTGGGCGCATTT 23126 || || | | | || || | | | ||| | || || | ||| ||| || | Sbjct 872 GGGGCAGCTGGTGTCG-ATAACGAAGTATCTTCA--ACCGGTTGAGTATTGAGCGTATGT 928 Query 23127 TTT--AATATAGAGCG-ATTCTTCATAGT-TAGTCCTCCCAACGAGGTTTGATTAGATCT 23182 ||| |||| ||| | |||||| | || || ||||| || ||||| || ||| Sbjct 929 TTTGGAATAACAGGCGCACGCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGA 987 Query 23183 TCGAAAATTTCTTTGCAGACTGGCTCCCAGATTTCCACTGCATTTCGCCAGGCATTAAGC 23242 ||||||||||| |||||||| || ||||| || | ||||||| ||||||| | Sbjct 988 TCGAAAATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTT 1047 Query 23243 GTTGAGCGTTGATTTGCTGCTTGCTCAAATACGGTGCGCATCTTGATCTGGCCTTTACCA 23302 | |||||||||| || || ||||| || || | |||| |||||| ||||||||| Sbjct 1048 GAAGAGCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCA 1107 Query 23303 ACTTCATCAGTGACCCGCACGACCTGTCGCAAGACCATAGCTCCCCAGGTATTTCGAATC 23362 |||||||| || | || || || | | | ||||| |||||||| || ||||| Sbjct 1108 ACTTCATCCGTTTCACGTACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATT 1167 Query 23363 TGCTCCTCCATCCACCGGGACTGATTGCCGTTAGTAAGGCTGTATTTGGTCAGGAGCAGG 23422 ||||||||||||||| |||||||| ||| ||| || |||||||||||| || | | Sbjct 1168 TGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATA 1227 Query 23423 CGGACGACAGGTTCAAAGCCGCCCAAATCGACGGTTTCAAGCAGGTCGAGCAGCATGGTG 23482 || || |||| || || || | ||| ||| | | ||||| || | ||||| | Sbjct 1228 CGTACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCG 1287 Query 23483 AAAAACTGAAGAACTGATGCATAGTCGAACAGCTCTGCAGGGGTTGCTACCACGATGACG 23542 |||||||| || | || | ||||| |||| ||| ||||| || | || | | || Sbjct 1288 AAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACA 1347 Query 23543 TCAGCAGCACAGACAACGTTAATAGTTCCCGTACCCAAGTTTGGCGCGCTGTCTATGACG 23602 ||||||||||| || || ||||| || || |||||| ||| ||||||||||| || || Sbjct 1348 TCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACT 1407 Query 23603 ATAATGTCGTAGTTATCCCATACAGACTCGATAGCAGCACGAAGCATCAGATGAGG-GGG 23661 || | || |||| || |||| || || || || |||||||| || || | Sbjct 1408 ATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCG 1467 Query 23662 ATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCAGATCTGTTTCAATGCGGTGAAGGGC 23721 || || || || || || | | ||| | || |||||||| ||||| || || Sbjct 1468 GTG-GGCAGTTTACCTTCATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGC 1526 Query 23722 CAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGCATGTTGGTTTTATCGCATATTCAGC 23781 ||| ||| || || ||||| || ||||||||||| || || ||||| ||||| | Sbjct 1527 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 1586 Query 23782 GTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGTGTATCGTCTGCGTGAATGTGCAAAT 23840 | ||| | ||| ||| || || || || || || || || ||||| ||||| || | || Sbjct 1587 ATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGAT 1645 Query 23841 CAGGAACGTAACCGTGGTACATAGATGCAGTCCCTTGCGGGTCGTTCCCTTCAACGAGTA 23900 | || || | ||||| ||||| || || || || || |||||||| ||||| ||||| | Sbjct 1646 CTGGTACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCA 1705 Query 23901 GGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCCTGGTGTACTGCAGATGAGGTTTTAT 23960 || || |||| | || || | || || | || || | | ||||||||| | Sbjct 1706 AAACACGTAGCCCCTTCAGAGCCAGATCCTGAGCAAGATGAACAGAAACTGAGGTTTTGT 1765 Query 23961 AAACCCCTCCCTTGTGTGACATAACGGAAAGTACAACCGGGTTTTTATCGTCAGGTCTTT 24020 |||| || || || || | ||| | || || | || |||| | | Sbjct 1766 AAACGCCACCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 1825 Query 24021 GGTTTGGGTTACCAAACACACTCCGCATATGGCTAATTTGGTCAATTGTGTAGCCAGCGC 24080 | | | ||||||||||| |||||||| ||||||| |||||||| || ||| | | Sbjct 1826 GCAATCGCGTACCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 1885 Query 24081 GACGTTCTACTCGGCCCCTCATCTCAAAATCAGGAGCCGGTAGACGACCAGCTTTTTCCG 24140 | | || || || || | || || | ||| || |||||| || || ||||| || | Sbjct 1886 GTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 1945 Query 24141 CGTCTCTGATAGCCTGCGGTGTTACGCCGATCAGGTCTGCAACTTCTGTTATACCCCAGC 24200 | |||||||||||||| | | || || | | || || |||| ||| | ||||| Sbjct 1946 CATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGC 2005 Query 24201 GGCGAGTAATACGACGCGCTTCCGGGCTGTCATCGCCGAACTGTGCGATGGCAATAGCGC 24260 | || || || | |||||||||||||||||| |||||||| ||||| ||||| Sbjct 2006 GCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCT 2065 Query 24261 GCGTCATTTCCTGACC 24276 ||||||||| ||||| Sbjct 2066 TCGTCATTTCATGACC 2081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148277549530702