Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1 140 3e-28 >seq1 Length=2541256 Score = 140 bits (154), Expect = 3e-28 Identities = 153/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 ||||| |||||||| |||| ||||| ||| |||| | | ||||| | |||| || Sbjct 1682352 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACGTT-AAGGCCAA 1682294 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| |||||||||||| |||||||||| || || |||| || ||||| || Sbjct 1682293 GATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATCTTTGCTGGCAAGCA 1682234 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || |||| ||||||||| |||||||||||||||||||||| ||| || || || Sbjct 1682233 GCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCT 1682174 Query 40896 AGTGTTGCGCTTGAGGGGCGG 40916 ||| | ||| || | || || Sbjct 1682173 GGTGCTCCGCCTGCGTGGTGG 1682153 Score = 132 bits (146), Expect = 5e-26 Identities = 108/131 (82%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || ||||| || || ||||||| |||||||||||| |||||| || ||||||||||| Sbjct 1848115 GCCGCCGTTGAAGGTATCTTCTTCTCGGGCAGTTTCTGCGCCATCTTCTGGCTCAAGAAG 1848056 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 ||||| | ||||| || ||||| |||||||||||||||||| | ||||| ||||| ||| Sbjct 1848055 CGCGGTTTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCGCAAGGGATGAGGGGCTG 1847996 Query 117173 CATTGCGACTT 117183 ||| |||||| Sbjct 1847995 CATGCCGACTT 1847985 Score = 132 bits (146), Expect = 5e-26 Identities = 152/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 ||||| |||||||| |||| ||||| ||| |||| | | ||||| | |||| || Sbjct 2427502 GGCAAGACCATCACGCTCGAGGTCGAGCCCAGTGACACTATCGAAAACGTT-AAGGCCAA 2427560 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| |||||||| ||| |||||||||| || || || | ||| ||||| || Sbjct 2427561 GATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTGATTTTCGCTGGCAAGCA 2427620 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 ||| || |||| ||||| ||| |||||||||||||||||||||| ||| || || || Sbjct 2427621 GCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCT 2427680 Query 40896 AGTGTTGCGCTTGAGGGGCGGC 40917 ||| | ||| || | || ||| Sbjct 2427681 GGTGCTCCGCCTGCGTGGTGGC 2427702 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 ||||||||||| || | || || || ||| |||| | ||| | |||| || Sbjct 1682087 GGCAAAACCATTACGTTGGAAGTTGAGCCCAGTGACACTATCGAAAATGTTAAGGCCAAG 1682028 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 || | ||||| |||||||||||| |||||||||| || || || | ||| ||||| ||| Sbjct 1682027 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGTCTGATTTTCGCCGGCAAGCAG 1681968 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || |||| ||||||||| |||||||||||||||||||||| ||| || || || Sbjct 1681967 CTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGAGCACCCTCCACCTG 1681908 Query 40897 GTGTTGCGCTTGAGGGGCGGCG 40918 ||| | ||| || | || |||| Sbjct 1681907 GTGCTCCGCCTGCGTGGTGGCG 1681886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216089364080