Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq5 93.3 4e-14 >seq1 Length=2541256 Score = 105 bits (116), Expect = 6e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||| || || |||||||| ||| | |||||| ||||| Sbjct 2427684 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCCTC 2427625 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || |||||| | || ||||||||||| || || || |||||||||||||| Sbjct 2427624 GAGCTGCTTGCCAGCGAAAATCAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 2427565 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | ||||| ||||| || ||||||||||| || | || || Sbjct 2427564 GATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTT 2427505 Query 118709 GCC 118711 ||| Sbjct 2427504 GCC 2427502 Score = 100 bits (110), Expect = 2e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||| || || |||||||| ||| | ||||| ||||| Sbjct 1682170 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 1682229 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || ||||| |||| ||||||||||| || || || |||||||||||||| Sbjct 1682230 GAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1682289 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | ||||| ||||| || ||||||||||| || | || || Sbjct 1682290 GATCTTGGCCTTAACGTTTTCGATAGTGTCACTGGGCTCGACCTCGAGCGTGATGGTCTT 1682349 Query 118709 GCC 118711 ||| Sbjct 1682350 GCC 1682352 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||||| || ||| || || |||||||| ||| | ||||| ||||| Sbjct 1681905 CACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTC 1681964 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| | || ||||||||||| || || || |||||||||||||| Sbjct 1681965 GAGCTGCTTGCCGGCGAAAATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 1682024 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | ||||| ||||| || ||| || || | || | ||||| Sbjct 1682025 GATCTTGGCCTTAACATTTTCGATAGTGTCACTGGGCTCAACTTCCAACGTAATGGTTTT 1682084 Query 118709 GCC 118711 ||| Sbjct 1682085 GCC 1682087 >seq5 Length=493739 Score = 93.3 bits (102), Expect = 4e-14 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 132878 GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGT 132937 ||| || || ||||| |||| | || || |||| ||||||| || || | || || Sbjct 439973 GTCAACAGTGAACTTAATGGCATCAGTAGCCGGTTGCGTGCGCAGGTAGTAAACACCAGT 439914 Query 132938 TTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACC--ACCGAGTAAGTGGGT 132995 ||||| | ||||| |||| |||| ||||| ||||| | | | ||||| | || || Sbjct 439913 TTTCAATCCTTTCTTCCACCCGTAGAAGTGCATGCTGGTGAGCTTACCGA--ACGTCGGC 439856 Query 132996 TCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCC 133055 | ||| ||| || |||||||| ||| || |||||| | | ||||| || ||| Sbjct 439855 TGCTCGATGTATATGTTAAGCGATTGCGACTGGTCGATGAAAATACCGCGGTCCGCCGCC 439796 Query 133056 ATGTTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGC 133115 |||| || || |||| ||||||||||| | |||||| | || | |||| || Sbjct 439795 ATGTCGATAATGTTCTTTTGCTTGATCTCCCAAACTGTCTTGTATAGGTCTTTGATGTGT 439736 Query 133116 TGTGGTATTTCGTCAATGT 133134 || ||||| | || |||| Sbjct 439735 TGCGGTATACCCTCGATGT 439717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827846230236