Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq5 159 5e-34 >seq5 Length=493739 Score = 159 bits (176), Expect = 5e-34 Identities = 725/1140 (64%), Gaps = 22/1140 (2%) Strand=Plus/Minus Query 79425 GAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATT 79484 ||| || |||| ||| || | || || ||||| | ||||||||||| || | | || Sbjct 439253 GAGCATGAACGTGTCGGCCAGACCCTGGACACCGACACCGATAGGTCGGTGGCGATGGTT 439194 Query 79485 AGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT--- 79541 || | | || ||||| | || || || || | || || ||||| ||||| || Sbjct 439193 GGACACCTTCGCCTCTGGTACCGGGTAGTAGTTCCTGTCAATGATTTTGTTGAGGTTGTA 439134 Query 79542 CCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAA-----TCGT--CCAT 79594 | ||| | || | | || || | ||||| ||| ||| | |||| || | Sbjct 439133 CGTGA---TGACACGGGCTACCTCGTAGAGTTTCTTAAAGTCATAAGTCTTCGTTTCCTT 439077 Query 79595 CTATTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 79654 | | ||| |||| || ||| | || |||||||| || || || || |||| | Sbjct 439076 GT-TCACATACATAGGCAGCGCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTG 439018 Query 79655 CCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTT 79714 || || || | |||||| |||||| || | |||| ||||| || | ||||||| Sbjct 439017 ACGTGTACTGCACGATTTCACAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTT 438958 Query 79715 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCT 79774 | || ||| ||| || ||||| || || || ||||||||||| || ||||| |||| Sbjct 438957 GGTTCGACTTCGCGTTGCAAGCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCT 438898 Query 79775 GAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATCTCTTT 79833 | | | || || ||||| ||||| | || || || ||| | | | Sbjct 438897 GGCTCTGGAGTATGGCGAACCAGAGCGACTGG-GCAGGGAT---AGTCTTACGACCCATG 438842 Query 79834 TCT--CTT-TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAAT 79890 | ||| ||||| | ||||| | ||||||||||||||||| || |||| | Sbjct 438841 CCGGCCTTCTCGTACTTGGTATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGA 438782 Query 79891 CCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATA 79950 ||| | ||||| || || |||||||||| ||| || || | | | || || ||||| Sbjct 438781 CCACGGCATTCATCCGGGCACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATG 438722 Query 79951 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 80010 || |||||||||||||| || || ||| || || | | | | ||||| || Sbjct 438721 AAAAGATCAGGAATCCAGAGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCG 438662 Query 80011 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 80070 |||||| | ||| | || |||| ||||||| |||||||| |||| ||| ||| Sbjct 438661 TGATTCTTGCGCAAATCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATG 438602 Query 80071 GCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 80130 || | | ||| || || || || || |||| ||| | ||||| |||| || Sbjct 438601 GCAAAAGAGCCCTTGCGCTTACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAA 438542 Query 80131 ACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCA 80190 | | |||||| || | |||||| ||| |||| || || ||| || ||| || Sbjct 438541 ATACGCAACATGGGCACAATACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCG 438482 Query 80191 CTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 80250 ||||| | || || || || || || || || || || ||| || || Sbjct 438481 CTGGCCCTGATTTTGTGGCACGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCA 438422 Query 80251 CATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAA 80310 ||| || | ||||| || | || || | |||||| |||||| || | || Sbjct 438421 CATTGTGTCAACGTGTCGAATATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAG 438362 Query 80311 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 80370 || |||||||||||| | | |||||| | | || | || |||| ||||| || Sbjct 438361 CAACTAGACATTTGGGGCCTTTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTG 438302 Query 80371 AACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGA 80430 || |||| | || | | ||||||| || | ||| | ||| | || Sbjct 438301 AAATATTTCTGGCTCATCAAGTGATACGTCTGGATGGTGCGTTCGAGATCGCCGCAGTGT 438242 Query 80431 ATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATT 80490 || || ||| |||||||| | ||||||||| || | |||||| || |||| | || Sbjct 438241 ATACCCGCCGAAACACGCATGAGCATGTGCTGTGGACGTTCAACAATTTTGTCGTCGATG 438182 Query 80491 TTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 80550 || | ||| ||| |||||||||||| | ||| || || | ||| ||||| ||| Sbjct 438181 CGCAGAAGGTAGGATCGTTCCAAAGTTTTCAGACCGAAGTAATCATATTGGAAGTCCCGT 438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264463452120