Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq5 161 1e-34 >seq5 Length=493739 Score = 161 bits (178), Expect = 1e-34 Identities = 609/945 (64%), Gaps = 18/945 (2%) Strand=Plus/Minus Query 62892 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62951 |||| || |||||||| || || || || |||| | || || || | || ||| Sbjct 439057 GCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGACGTGTACTGCACGATTTCA 438998 Query 62952 GTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 63011 ||| ||||| | ||||||| || || | |||||||| || ||| ||| || Sbjct 438997 CAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTGGTTCGACTTCGCGTTGCAA 438938 Query 63012 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 63071 ||||| || || || ||||| ||||| || ||||| ||||| | | || || | Sbjct 438937 GCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTGGCTCTGGAGTATGGCGAAC 438878 Query 63072 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCT--CTT-TCGTATAGTGT 63127 |||| ||||| | || || || || | | | | ||| ||||| || Sbjct 438877 CAGAGCGACTGG-GCAGGGAT---AGTCTTACGACCCATGCCGGCCTTCTCGTACTTGGT 438822 Query 63128 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACA 63187 ||||| ||||||||||||||||| || | || | ||| | ||||||||||| || Sbjct 438821 ATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCACGGCATTCATCCGGGCA 438762 Query 63188 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63247 |||||||| ||| || |||| | | ||| || ||||| || |||||||||||||| || Sbjct 438761 CATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAAGATCAGGAATCCAGAG 438702 Query 63248 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63307 || ||| || || | | | | ||||| || |||||| | ||| | Sbjct 438701 CGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCAAATCCAA 438642 Query 63308 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63367 || |||| ||||||| |||||||| |||| ||| ||||| | | || || || Sbjct 438641 AAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCTTGCGCTT 438582 Query 63368 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63427 || || || |||| ||| | ||||| |||| ||| | |||||| || | ||| Sbjct 438581 ACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACAAT 438522 Query 63428 ACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63487 |||||| |||| || || ||| || ||| || ||||| | || || Sbjct 438521 ACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGGCA 438462 Query 63488 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATA 63547 || || || || || || || || ||| || || ||| || | |||||||| | Sbjct 438461 CGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCGAA 438402 Query 63548 GATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63607 || || | |||||| |||||| || | || || |||||||||||| | | Sbjct 438401 TATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAGCAACTAGACATTTGGGGCCT 438342 Query 63608 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT----TTCAGAAA 63663 |||||| | | || | || |||| ||||| || || |||| ||| || Sbjct 438341 TTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTGAAATATTTCTGGCTCATCAA 438282 Query 63664 GTAGATTGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACA 63722 || || ||||||| || | || | || | ||| | || || || | | ||| Sbjct 438281 GT-GA---TACGTCTGGAT-GGTGCGTTCGAGATCGCCGCAGTGTATACCCGCCGAAACA 438227 Query 63723 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63782 ||||| | ||||||||| || | |||||| || |||| || || || | ||||||| Sbjct 438226 CGCATGAGCATGTGCTGTGGACGTTCAACAATTTTGTCGTCGATGCGCAGAAGGTAGGAT 438167 Query 63783 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63827 |||||||||||| | ||| || || | ||| ||||| ||| Sbjct 438166 CGTTCCAAAGTTTTCAGACCGAAGTAATCATATTGGAAGTCCCGT 438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943438956280