Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq5 165 1e-35 >seq5 Length=493739 Score = 165 bits (182), Expect = 1e-35 Identities = 610/945 (65%), Gaps = 18/945 (2%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| || |||||||| || || || || |||| | || || || | || ||| Sbjct 439057 GCAATGGAAGCCAGATTGCACACCGCAACTTCATCCGGTGACGTGTACTGCACGATTTCA 438998 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||| ||||| | |||||||||| || | |||||||| || ||| ||| || Sbjct 438997 CAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTTTTGTTGGTTCGACTTCGCGTTGCAA 438938 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 ||||| || || || ||||| ||||| || ||||| ||||| | | || || | Sbjct 438937 GCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTCGATCTGGCTCTGGAGTATGGCGAAC 438878 Query 62927 CAGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCT--CTT-TCGTATAGTGT 62982 |||| ||||| | || || || || | | | | ||| ||||| || Sbjct 438877 CAGAGCGACTGG-GCAGGGAT---AGTCTTACGACCCATGCCGGCCTTCTCGTACTTGGT 438822 Query 62983 ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACA 63042 ||||| ||||||||||||||||| || | || || ||| | ||||||||||| || Sbjct 438821 ATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAGACCACGGCATTCATCCGGGCA 438762 Query 63043 CATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||||||| ||| || |||| | | ||| || ||||| || |||||||||||||| || Sbjct 438761 CATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCATGAAAAGATCAGGAATCCAGAG 438702 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| || || | | | | ||||| || |||||| | ||| | Sbjct 438701 CGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCAAATCCAA 438642 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTT 63222 || |||| ||||||| |||||||| |||| ||| ||||| | | || || || Sbjct 438641 AAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCTTGCGCTT 438582 Query 63223 GTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAAT 63282 || || || |||| ||| | ||||| |||| ||| | |||||| || | ||| Sbjct 438581 ACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACAAT 438522 Query 63283 ACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAAT 63342 ||| ||| |||| || || || || ||| || ||||| | || || Sbjct 438521 ACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGGCA 438462 Query 63343 TGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATA 63402 || || || || || || || || ||| || || ||| || | ||||| || | Sbjct 438461 CGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCGAA 438402 Query 63403 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 63462 || || | ||||||| |||||| || | || || |||||||||||| | | Sbjct 438401 TATTCCAGACAGCGAATCATCCTTCATGTCCAGCAAGAAGCAACTAGACATTTGGGGCCT 438342 Query 63463 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT----TTCAGAAA 63518 |||||| | | || | || |||| ||||| || || |||| ||| || Sbjct 438341 TTGAGTTCCAGAAAAGAAGAGCGTGGGAGTTGCGTGTGTGAAATATTTCTGGCTCATCAA 438282 Query 63519 GTAGATTGTACGTCTCAATAGCTGAG-TCTATATCCCATTGATGAATTCCTACTGCGACA 63577 || || ||||||| || | || | || | ||| | || || || | | ||| Sbjct 438281 GT-GA---TACGTCTGGAT-GGTGCGTTCGAGATCGCCGCAGTGTATACCCGCCGAAACA 438227 Query 63578 CGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGAT 63637 ||||| | ||||||||| || | |||||| || |||| || || || | ||||||| Sbjct 438226 CGCATGAGCATGTGCTGTGGACGTTCAACAATTTTGTCGTCGATGCGCAGAAGGTAGGAT 438167 Query 63638 TTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 63682 |||||||||||| | ||| || || | ||| ||||| ||| Sbjct 438166 CGTTCCAAAGTTTTCAGACCGAAGTAATCATATTGGAAGTCCCGT 438122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633628174446800