Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5 214 3e-50 seq1 109 1e-18 >seq5 Length=493739 Score = 214 bits (236), Expect = 3e-50 Identities = 667/1025 (65%), Gaps = 22/1025 (2%) Strand=Plus/Minus Query 244297 GCCCCACATGTCAAACTGCAGCAGCCCCT-TGCTGACGGGGCTGCCCTCGTAGGTCGGGT 244355 |||||| | ||| ||||| ||| |||| || || || | ||| | ||| ||| | Sbjct 439427 GCCCCAAAGGTCGAACTGGAGCTTGCCCTGTGATGCTGGAGA-GCCTTGGTACGTCTCAT 439369 Query 244356 AGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCT 244415 | || || ||||||| |||||| | | ||| || || |||||||||| || | Sbjct 439368 ATGGGCCATCGCGCTCCGCCAGCGAAATGGACTCATCCAGACAACCGTAGTAGATTGTTT 439309 Query 244416 CGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGT--GAAGGGGATGCCCATCAT 244473 | || || |||| || ||||| || ||| ||| ||| | ||| | Sbjct 439308 CAAAAATGCGACGATTCAACTCTTTGGCCT--CCTCAGACTCGAATGGGTACCGCATGAG 439251 Query 244474 CATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGA 244533 |||||| ||||||||| ||||| || |||| ||||| |||| ||| || | |||||| Sbjct 439250 CATGAACGTGTCGGCCAGACCCTGGACACCGACACCGATAGGTCGGTGGCGATGGTTGGA 439191 Query 244534 GCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGT 244593 | | || || || || ||||| |||| | ||| || | |||||||||||| || Sbjct 439190 CACCTTCGCCTCTGGTACCGGGTAGTAGTTCCTGTCAATGATTTTGTTGAGGTTGTACGT 439131 Query 244594 GATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 ||| | ||| | || ||| || || |||||| || | | |||| | Sbjct 439130 GATGACACGGGCTACCTCGTAGAGTTTCTTAAAGTCATAAGTCTTCGTTTCCTTGT---- 439075 Query 244654 GGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 ||||| || || || | | ||||| ||||| || || || || || Sbjct 439074 --------TCACATACATAGGCAGCGCAATGGAAGCCAGATTGCACACCGCAACTTCATC 439023 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 || |||||||| || || || |||||| || |||||||||| || |||| Sbjct 439022 CGGTGACGTGTACTGCACGATTTCACAGCAGAGATTTGAAGACTTGATGGTCCCAAGGTT 438963 Query 244774 CTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 || || || ||||| |||||||| || || |||||||||||||| || || || || Sbjct 438962 TTGTTGGTTCGACTTCGCGTTGCAAGCATCTTTGTAGAGCATGAACGGAGTTCCTGTTTC 438903 Query 244834 GAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTT 244893 || |||| ||| | | | |||||| | || || ||| | ||| || | Sbjct 438902 GATCTGGCTCTGGAGTATGGCGAACCAGAGCGACTGGGCAGGGATAGTCTTACGACCCAT 438843 Query 244894 GCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAG 244953 ||| | |||||| ||| ||||| ||||||||||| ||||||||||||| || Sbjct 438842 GCCGGCCTTCTCGTACTTGGTATACAGCTCCTCGAACTCGTCTCCCCAGACCTCGTAAAG 438783 Query 244954 GCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCAT 245013 || |||| |||||||||| | |||| |||||| | | | || | || ||| Sbjct 438782 ACCACGGCATTCATCCGGGCACATCAACGTCCAATCGCCGTTGGCTTCCACACGCTTCAT 438723 Query 245014 GAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTC-CCTGGTCCTCTGCTCGTCCGAGC 245072 ||| || || || |||||||| || | || ||||| | || | || || |||| || Sbjct 438722 GAAAAGATCAGGAATCCAGAGCGCATAAAACAGGTCACGTGCGCGAGTG-TCCTCCGCGC 438664 Query 245073 CAGTG-TTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAG 245131 | ||| ||||| | || ||||||||||| | || || ||||||| ||||||| ||| Sbjct 438663 C-GTGATTCTTGCGCAAATCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAA 438605 Query 245132 ACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTG 245191 | || | | ||| ||||| ||| || ||||| || | | || || || Sbjct 438604 ATGGCAAAAGAGCCCTTGCGCTTACCGCCACCTTGGTCTACGTAGCGCGCGGTTGCATTA 438545 Query 245192 AAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCG 245251 || || |||| | ||||| || ||||| | ||||| ||||| ||||||||| Sbjct 438544 AAAATACGCAACATGGGCACAATACCGTTGCTCTTACCGTTTGTGCCGCGAATGTAGGCG 438485 Query 245252 CCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGG 245311 || || |||||| ||| | |||| ||| | || || ||| |||| ||||| | Sbjct 438484 CCGCTGGCCCTGATTTTGTGGCACGACAGGCCGATGCCACCAGCGCACTTGCTGATGAAG 438425 Query 245312 GCGCA 245316 || || Sbjct 438424 GCACA 438420 >seq1 Length=2541256 Score = 109 bits (120), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 42707 GGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTG 42766 ||| || | | ||||||| || || ||||||||||||||| ||| | |||||||||| Sbjct 1848125 GGTCGCTTATGCCGCCGTTGAAGGTATCTTCTTCTCGGGCAGTTTCTGCGCCATCTTCTG 1848066 Query 42767 GCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 ||||||| || | | |||||| || || || ||| ||||| |||||| ||||| Sbjct 1848065 GCTCAAGAAGCGCGGTTTGATGCCGGGGCTGACGTTCAGCAACGAGCTCATCGCAAGGGA 1848006 Query 42827 CGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCC 42886 |||||||||||| ||||| | ||| || ||| | |||||| ||||||| Sbjct 1848005 TGAGGGGCTGCATGCCGACTTCGGATGCTTC---ATCTACAAAAACCTCAAGCACAAGTT 1847949 Query 42887 CTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGT 42925 || |||| || || | | ||||||| ||| ||||| Sbjct 1847948 GCCGGAGGACCGCGTTCAGCAGATCATCATGGAAGCCGT 1847910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944333498552080