Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1 111 2e-18 seq4 105 8e-17 seq3 96.9 4e-14 seq5 93.3 5e-13 seq2 89.7 6e-12 >seq1 Length=2541256 Score = 111 bits (122), Expect = 2e-18 Identities = 86/101 (85%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||||| || | || || ||||| | ||||||||||||||||| |||||||||||| Sbjct 1848021 TCGTTGCTGAACGTCAGCCCCGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAG 1848080 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA-AAGC 869300 |||||||||||||| ||||| || || ||||||||| |||| Sbjct 1848081 AAACTGCCCGAGAAGAAGATACCTTCAACGGCGGCATAAGC 1848121 >seq4 Length=893602 Score = 105 bits (116), Expect = 8e-17 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 1254350 CAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTGTT 1254409 || ||| ||| ||| | || || ||||||||||| || ||||| | || || ||| | Sbjct 315537 CAATTCACCGGGCAGCAAGAGACGTACGGCGGTCTGAATTTCGCGGGAGCTGAGAGTGCT 315478 Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCG-GTGCCGATGCGGTCGATCATGTCGT 1254468 |||||| | || | | |||||| | ||| |||||||||| ||||||| Sbjct 315477 CTTCTTGTTGTACCTGATGAGCCTGGTAGCCTCGAGAGCC-ATGCGGTCGAAAATGTCGT 315419 Query 1254469 TGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCT 1254528 ||| || |||||||||| ||||| ||||| ||||| | || ||||||||||| | Sbjct 315418 TGATGAAAGAGTTCATGATAGACATAGACTTCTTGGAAACACCGGTCTCGGGGTGCACTT 315359 Query 1254529 GCTTGAGCACCTTGTAGATG 1254548 |||| ||||||||||||||| Sbjct 315358 GCTTAAGCACCTTGTAGATG 315339 >seq3 Length=3518759 Score = 96.9 bits (106), Expect = 4e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 507082 CAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGCGGCAA 507141 ||||||| || |||| || |||| |||||||||||||||| | |||| ||||| Sbjct 1575308 CAAGCCCGGCAGGGGCATCTGCCAGCGCCTCAAGGGCAAGGAGGGCCGTTTCCGGGGCAA 1575367 Query 507142 TTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCCGAGAT 507201 | |||||| | ||| |||| |||||||| | || || ||||||||| | | Sbjct 1575368 CCTGAGCGGCAAGAGGGTCGACTTCTCCGCGCGCACGGTGATTTCGCCCGACCCCAACGT 1575427 Query 507202 CGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCG 507261 | ||| |||||||||| |||||| | ||||| || || |||||| || |||||| Sbjct 1575428 GGGCATCGACGAGGTGGTGGTGCCCGAGTGGATCGCCATGAAGCTCACGTTCCCCGAGAA 1575487 Query 507262 CGTGAC 507267 ||||| Sbjct 1575488 GGTGAC 1575493 >seq5 Length=493739 Score = 93.3 bits (102), Expect = 5e-13 Identities = 144/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||| ||||||||||| || | ||||| | || | ||||||||| | |||||| | Sbjct 438571 TGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACAATACCGTTGCTC 438512 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTG-CGCGGCAAAGCC 1630184 | ||||| ||||| | |||||||||| ||| | | ||||| | || || ||| Sbjct 438511 TTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGGCACGACAG-GCC 438453 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 |||||| || || ||||| ||||| || || ||| | | ||||||| | || || Sbjct 438452 GATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCGAATATTCCAGA 438393 Query 1630245 GATCGAGTCGGCCTTCATGTCCA 1630267 | ||| || |||||||||||| Sbjct 438392 CAGCGAATCATCCTTCATGTCCA 438370 Score = 87.8 bits (96), Expect = 2e-11 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 |||| || || ||||| ||||| || || || | |||||| |||||| ||||| | Sbjct 438708 TCCAGAGCGCATAAAACAGGTCACGTGCGCGAGTGTCCTCCGCGCCGTGATTCTTGCGCA 438649 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 || | |||| | || || |||||||||||||||||||| |||||| | ||||| Sbjct 438648 AATCCAAAAAGTCCATGATATCAGCGTGCCACGGCTCCAGGTAAATGGCAAAAGAGCCCT 438589 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||||| || Sbjct 438588 TGCGCTTACCGCCACC 438573 >seq2 Length=2823968 Score = 89.7 bits (98), Expect = 6e-12 Identities = 104/139 (75%), Gaps = 6/139 (4%) Strand=Plus/Minus Query 507716 AACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCAC 507775 |||||| | ||||| | |||||||| ||||| ||||| ||||||||||| |||||| Sbjct 1678865 AACCTGTCGGTCACCTCGCCGTACAACGCGGACTTCGACGGAGACGAGATGAATCTGCAC 1678806 Query 507776 GTGCCCCAGTC---CGAGACGGCGCGCGCCGAGGTGACGCACACCATGAGCGTGTCGCTC 507832 | ||||| | ||||||| ||||||||||||| |||| |||| |||| | Sbjct 1678805 CTCGCCCAGACGCACGAGACG---CGCGCCGAGGTGAAGCACCTCATGCTCGTGCCCAAG 1678749 Query 507833 AAGACCGTGTCGCCGCAGG 507851 ||| ||| |||||||||| Sbjct 1678748 CAGATCGTTTCGCCGCAGG 1678730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107099562758111