Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq4 158 2e-32 seq3 102 1e-15 seq1 102 1e-15 seq2 93.3 7e-13 seq5 86.0 1e-10 >seq4 Length=893602 Score = 158 bits (174), Expect = 2e-32 Identities = 184/243 (76%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| || ||||||||| | | || ||| ||| ||| Sbjct 315583 TGTATTTGGTGACGGCCTTGGTTCCCTCAGACACGGCGTGCTTAGACAATTCACCGGGCA 315524 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || ||||||||||| || ||||||| || || ||| | |||||| || | Sbjct 315523 GCAAGAGACGTACGGCGGTCTGAATTTCGCGGGAGCTGAGAGTGCTCTTCTTGTT-GTAC 315465 Query 1485590 GCGCC-AGGCGGCCGGCCTCG-GTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647 | || | | |||||| | ||| |||||||||| |||||||||| || ||||| Sbjct 315464 CTGATGAGCCTGGTAGCCTCGAGAGCC-ATGCGGTCGAAAATGTCGTTGATGAAAGAGTT 315406 Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTT 1485707 |||||| ||||| || || ||||| | || ||||||||||| ||||| |||||||| Sbjct 315405 CATGATAGACATAGACTTCTTGGAAACACCGGTCTCGGGGTGCACTTGCTTAAGCACCTT 315346 Query 1485708 GTA 1485710 ||| Sbjct 315345 GTA 315343 >seq3 Length=3518759 Score = 102 bits (112), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 429038 CAAGCCCACCAAGGGCGTCGTGGAGCGATTCAAGGGCAAGGAGGGCCGGATCCGCGGCAA 429097 ||||||| || |||| || |||| ||||||||||||||||||| |||| ||||| Sbjct 1575308 CAAGCCCGGCAGGGGCATCTGCCAGCGCCTCAAGGGCAAGGAGGGCCGTTTCCGGGGCAA 1575367 Query 429098 TTGCATGGGCAAGCGCGTCAACTTTACGGCGCGCGCCGTCATCAGTCCCGACCCCGAAAT 429157 | |||||| | ||| |||| | |||||| | || || ||||||||| | | Sbjct 1575368 CCTGAGCGGCAAGAGGGTCGACTTCTCCGCGCGCACGGTGATTTCGCCCGACCCCAACGT 1575427 Query 429158 CGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCCGAGCG 429217 | ||| |||||||||| |||||| | ||||| || || |||||| || |||||| Sbjct 1575428 GGGCATCGACGAGGTGGTGGTGCCCGAGTGGATCGCCATGAAGCTCACGTTCCCCGAGAA 1575487 Query 429218 CGTGAC 429223 ||||| Sbjct 1575488 GGTGAC 1575493 Score = 86.0 bits (94), Expect = 1e-10 Identities = 134/188 (71%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 429533 GCGCCACCTGCGCACCGGCGACCCCGTGGTCATGAACCGGCAGCCGTCGCTCCAC---AT 429589 |||||||||| | ||||||| ||| | | ||||| ||||||||||| ||| || Sbjct 1575653 GCGCCACCTGTGGGACGGCGACGTGGTGCTGTTCAACCGCCAGCCGTCGCTGCACCGCAT 1575712 Query 429590 GGGGTCGATGCTCAACCACAAGGTGGTGCCCATGCCCGGTCGCACCTTCCGGCTCAACCT 429649 | | ||| | ||| | | ||| ||||| || || |||||| ||||| Sbjct 1575713 GAGCATCATGGCCCACCGCGTGCGCGTG---ATGCCGGGGTCTACGTTCCGGTTCAACGA 1575769 Query 429650 GGCCGTGA-CGGGCACCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGC 429708 | |||| | || | |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 1575770 GTGCGTGTGCCAGC-CGTACAACGCCGACTTCGACGGCGACGAGATGAACCTGCACCTGC 1575828 Query 429709 CCCAGTCG 429716 | ||| || Sbjct 1575829 CGCAGACG 1575836 >seq1 Length=2541256 Score = 102 bits (112), Expect = 1e-15 Identities = 84/101 (83%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 794362 TCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAG 794421 |||||||| || || || ||||| | ||||||||||||||||| |||||||| ||| Sbjct 1848021 TCGTTGCTGAACGTCAGCCCCGGCATCAAACCGCGCTTCTTGAGCCAGAAGATGGCGCAG 1848080 Query 794422 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCA-AAGC 794461 |||||||||||||| ||||| || || ||||||||| |||| Sbjct 1848081 AAACTGCCCGAGAAGAAGATACCTTCAACGGCGGCATAAGC 1848121 >seq2 Length=2823968 Score = 93.3 bits (102), Expect = 7e-13 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || |||||||||||||| || ||||||||| | | ||| || || | | Sbjct 438400 TGAACTTAGTCACTGCCTTGGTACCCTCAGACACGGCGTGCTTCGACAGCTCACCAGGGA 438341 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | || || ||||| | |||||||| || | || | |||||| || Sbjct 438340 GAACAAGCCTGACCGCAGTCTGCACCTCGCGGGAGCTAAGGGTCTCCTTCTTGTT-GTAT 438282 Query 1485590 GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 || | || || ||||||| || |||| ||||| ||||| | | || |||||| Sbjct 438281 TTGCAAAGCTTGCTGGCCTCGCTGGCGATCTTGTCGAAGGTGTCGGTAATGAAGGAGTTC 438222 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||||| ||| || || ||| || || ||| ||||| || ||||| ||||||||| Sbjct 438221 ATGATCATCATGGACTTCTTGCTAATACCGGTGTCTGGGTGAACTTGCTTAAGCACCTTG 438162 >seq5 Length=493739 Score = 86.0 bits (94), Expect = 1e-10 Identities = 179/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||| || |||||||| || | ||||| | || | ||||||||||| |||||| | Sbjct 438571 TGGTCTACGTAGCGCGCGGTTGCATTAAAAATACGCAACATGGGCACAATACCGTTGCTC 438512 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTG-CGCGGCAAAGCC 2073659 | ||||| ||||| | ||||||||| ||| | | ||||| | || || ||| Sbjct 438511 TTACCGTTTGTGCCGCGAATGTAGGCGCCGCTGGCCCTGATTTTGTGGCACGACAG-GCC 438453 Query 2073660 GATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTC 2073719 |||||| || || |||| ||||| || || | | ||| ||| ||| | || || Sbjct 438452 GATGCCACCAGCGCACTTGCTGATGAAGGCACATTGTGTCAACGTGTCGAATATTCCAGA 438393 Query 2073720 GATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCC 2073779 | ||| || |||||||||||| || ||||| || |||| || | || || Sbjct 438392 CAGCGAATCATCCTTCATGTCCAGCAAGAAGCAACTAGACATTTGGGGCCTTTGAGTTCC 438333 Query 2073780 GGCATTGAAGAGCGTGGGCGTCGC 2073803 | | |||||||||||| || || Sbjct 438332 AGAAAAGAAGAGCGTGGGAGTTGC 438309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916195021087037