Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq4 127 3e-23 seq3 102 1e-15 seq1 96.9 5e-14 seq5 86.0 9e-11 >seq4 Length=893602 Score = 127 bits (140), Expect = 3e-23 Identities = 172/237 (73%), Gaps = 16/237 (7%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| Sbjct 315340 ATCTACAAGGTGCTTAAGCAAGTGCACCCCGAGACCGGTGTT------TCCAAGAAGTCT 315393 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCAC-CGAGGCCGG 725029 ||||| ||||||||||| || |||||||||| |||||||||| ||| | |||||| Sbjct 315394 ATGTCTATCATGAACTCTTTCATCAACGACATTTTCGACCGCAT-GGCTCTCGAGGC--- 315449 Query 725030 TCGCCTGGCGC----GCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCG 725085 || ||| | | | ||||||| | ||| || || | ||||| || ||||||| Sbjct 315450 -TACCAGGCTCATCAGGTACAACAAGAAGAGCACTCTCAGCTCCCGCGAAATTCAGACCG 315508 Query 725086 CCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| || || | ||| ||| ||| || | | ||||||||| || ||||| |||| Sbjct 315509 CCGTACGTCTCTTGCTGCCCGGTGAATTGTCTAAGCACGCCGTGTCTGAGGGAACCA 315565 >seq3 Length=3518759 Score = 102 bits (112), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 1818081 GTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACGCCCACCTCGTCA 1818140 ||||| |||||| || |||||| || || ||||| | |||||| |||||||||| Sbjct 1575493 GTCACCTTCTCGGGGAACGTGAGCTTCATGGCGATCCACTCGGGCACCACCACCTCGTCG 1575434 Query 1818141 ATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTGACGCGCTTGCCC 1818200 ||| | | | ||||||||| || || | |||||||| |||| ||| | |||||| Sbjct 1575433 ATGCCCACGTTGGGGTCGGGCGAAATCACCGTGCGCGCGGAGAAGTCGACCCTCTTGCCG 1575374 Query 1818201 ATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACGAGGCCCTTGGTG 1818260 | ||||| |||| | ||||||||||||||||| |||| || |||| || | Sbjct 1575373 CTCAGGTTGCCCCGGAAACGGCCCTCCTTGCCCTTGAGGCGCTGGCAGATGCCCCTGCCG 1575314 Query 1818261 GGCTTG 1818266 |||||| Sbjct 1575313 GGCTTG 1575308 >seq1 Length=2541256 Score = 96.9 bits (106), Expect = 5e-14 Identities = 85/102 (83%), Gaps = 3/102 (3%) Strand=Plus/Minus Query 1456192 GCTT-TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 |||| |||||| || || || ||||| |||||||||||||||||||||||||| |||||| Sbjct 1848121 GCTTATGCCGCCGTTGAAGGTATCTTCTTCTCGGGCAGTTTCTGCGCCATCTTCTGGCTC 1848062 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGA 1456291 ||||||||||| | ||||| || || | || |||||||| Sbjct 1848061 AAGAAGCGCGGTTTGATGCCGGGGCTGACG-TTCAGCAACGA 1848021 >seq5 Length=493739 Score = 86.0 bits (94), Expect = 9e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| || |||||||||||| |||||| | || || | |||||| | | || Sbjct 438360 TGCTTCTTGCTGGACATGAAGGATGATTCGCTGTCTGGAATATTCGACACGTTGACACAA 438419 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCC 260089 || || ||||| |||| || || |||||||| | | ||||| | | ||| Sbjct 438420 TGTGCCTTCATCAGCAAGTGCGCTGGTGGCATCGGCCTGTCGTGCCACAAAATCAGGGCC 438479 Query 260090 GCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGC 260149 ||||||||| | ||||| ||||| || |||||| ||||||||||| | || Sbjct 438480 AGCGGCGCCTACATTCGCGGCACAAACGGTAAGAGCAACGGTATTGTGCCCATGTTGCGT 438539 Query 260150 GTTTTTAACGACACGGCGCGCTACGTCGACCA 260181 ||||||| | || ||||||||||| ||||| Sbjct 438540 ATTTTTAATGCAACCGCGCGCTACGTAGACCA 438571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177764613762246