Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 131 5e-25 seq4 84.2 7e-11 seq2 84.2 7e-11 >seq1 Length=2541256 Score = 131 bits (144), Expect = 5e-25 Identities = 461/713 (65%), Gaps = 24/713 (3%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCA--AAATGATC 349256 || || || |||||||| ||||| || || || ||||| | ||| | | | | | | Sbjct 535469 GCGATTGGTATCGATTTGGGTACCACCTACTCCTGTGTGGGTGTCTACAAGGACAACAAC 535528 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 ||| ||| | || | ||||| ||||| ||||| || ||||| || || || || || | Sbjct 535529 GTGGAGA--TCATCCCTAATGACCAAGGAAACAGGACCACGCCCTCGTATGTCGCCTTCA 535586 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| || |||||| |||||||||| | || || || || | || || || | | Sbjct 535587 CCGACACCGAGCGTCTGATTGGTGACGCCGCCAAGAACCAGGAGGCCCGCAACCCTGAGA 535646 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACA---C 349433 | || || || || || ||| | || || || || || ||| ||| | | || | Sbjct 535647 ACACCGTCTTCGACGCCAAGAGGCTCATCGGAAGGAGGTTT---GACGACCCCACCGTTC 535703 Query 349434 AATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGAT------AAAC 349487 || ||| | || || | || || | || | ||| ||||| | || | Sbjct 535704 AAGATGACATGAAGCACTGGCCCTTCAAGGTCAT--CAA----CGGTGTTGGCGGCAAGC 535757 Query 349488 CAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCA 349546 | | ||||| || | | ||| | || || | || |||| |||||||| || Sbjct 535758 CCACCATTGAAGTCACCT-TCCAGGGACAGAAGAAGACCTTCCACCCCGAAGAAATCTCG 535816 Query 349547 TCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACT 349606 || ||||| | | || |||||||| |||||||| || | || | | || | Sbjct 535817 TCTATGGTCCTCATCAAGATGAAGGAGATTGCTGAGCTCTACCTCGGCAAGCCCGTCAAG 535876 Query 349607 GATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGAT 349666 || || || || || || || ||||| || || || |||||||| || || || ||| Sbjct 535877 GACGCCGTCATCACCGTGCCTGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGAT 535936 Query 349667 GCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCA 349726 || || | ||| || || | ||||| | | || || || || ||||| || || || Sbjct 535937 GCCGGTACCATCGCCGGACTCAATGTCATGCGTATCATCAACGAGCCCACCGCCGCCGCC 535996 Query 349727 ATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTA 349786 ||||| || || ||||| || | | | | || || || | || || || ||| | Sbjct 535997 ATTGCGTACGGTCTTGACAAGAAGGGCTCTGAGGAGAAGAACGTGCTCATCTTCGATCTT 536056 Query 349787 GGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAA 349846 || |||||||| || ||||| || | || || | || || || || || || || || Sbjct 536057 GGAGGTGGTACCTTCGATGTGTCCATCCTTACCATCGAGGACGGTATCTTCGAGGTCAAG 536116 Query 349847 GCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 || || || ||||| || || |||||||| || || || || || | ||||| Sbjct 536117 GCCACCGCCGGTGACACCCACCTTGGTGGTGAGGACTTCGACAACCTGCTCGT 536169 >seq4 Length=893602 Score = 84.2 bits (92), Expect = 7e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 424075 CCCTTAGCTCAGTTGGTAGAGCGCACGACTTTTAATCGTGTGGCCAGCGGTTCGAGCCCG 424134 || ||||||||||||||||||||| ||||||||||| |||| ||| ||||||||||| Sbjct 396709 CCTTTAGCTCAGTTGGTAGAGCGCCAGACTTTTAATCTGGTGGTCAGGGGTTCGAGCCCC 396768 Query 424135 CTAGGG 424140 |||||| Sbjct 396769 CTAGGG 396774 >seq2 Length=2823968 Score = 84.2 bits (92), Expect = 7e-11 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGTGGTCTAAGGGGGCAGACTTAAGATCTGCTGG-CGAAAG-CCTC 423822 |||| ||||| ||||| |||| |||| | |||||| ||| |||| ||| ||| || |||| Sbjct 2755118 AGCACGGATGGCCGAGCGGTCAAAGGCGCCAGACTCAAGTTCTGGTGGGCGAGAGTCCTC 2755177 Query 423823 GTGGGTTCAAACCCCACTCCGTGCA 423847 ||||||||||| |||||| |||||| Sbjct 2755178 GTGGGTTCAAATCCCACTTCGTGCA 2755202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515245022942849