Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bigemina_20[genbank_20GCA_5F000981445.1_202014-06-13] 483 sequences; 13,840,936 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq5 183 3e-41 seq3 134 2e-26 >seq5 Length=493739 Score = 183 bits (202), Expect = 3e-41 Identities = 474/718 (66%), Gaps = 12/718 (2%) Strand=Plus/Plus Query 53244 AGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACG 53303 ||||||| |||| |||||||| || || || || ||||| || || || || ||| Sbjct 438271 AGACGTATCACTTGATGAGCCAGAAATATTTCACACACGCAACTCCCACGCTCTTCTTTT 438330 Query 53304 CTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGA 53363 |||| || | || || ||||| || |||||| || ||| ||||||||||| ||| Sbjct 438331 CTGGAACTCAAAGGCCCCAAATGTCTAGTTGCTTCTTGCTGGACATGAAGGATGATTCGC 438390 Query 53364 TCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTA 53423 | || || | ||| ||| | | | |||||| |||| |||||| | ||||| | Sbjct 438391 TGTCTGGAATATTCGACACGTTGACACAATGTGCCTTCATCAGCAAGTGCGCTGGTGGCA 438450 Query 53424 TCGGTATCCACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCG 53483 |||| | ||| || || | || | |||| | || || || ||||| Sbjct 438451 TCGGCCTGTCGTGCCACAAAATCAGGGCCAGCGGCGCCTACATTCGCGGCACAAACGGTA 438510 Query 53484 TCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACC 53543 | | || || ||||| ||| | || | || || || || || ||||| ||| Sbjct 438511 AGAGCAACGGTATTGTGCCCATGTTGCGTATTTTTAATGCAACCGCGCGCTACGTAGACC 438570 Query 53544 AGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACA 53603 | ||||| || ||||||||||| || || ||||| ||||| |||||||||||||| || | Sbjct 438571 AAGGTGGCGGTAAGCGCAAGGGCTCTTTTGCCATTTACCTGGAGCCGTGGCACGCTGATA 438630 Query 53604 TTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACC 53663 | ||||| ||| | || |||| |||||| || | || || | ||| ||||||| Sbjct 438631 TCATGGACTTTTTGGATTTGCGCAAGAATCACGGCGCGGAGGACACTCGCGCACGTGACC 438690 Query 53664 TGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAG--GACGAGGA 53721 ||||| || || |||||||| || || |||||| || ||| |||| ||| || Sbjct 438691 TGTTTTATGCGCTCTGGATTCCTGATCTTTTCATG--AAGCGTGTGGAAGCCAACGGCGA 438748 Query 53722 GTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTT 53781 ||| ||||||||||| | || |||| || || | | |||| || || ||||| Sbjct 438749 TTGGACGTTGATGTGCCCGGATGAATGCCGTGGTCTTTACGAGGTCTGGGGAGACGAGTT 438808 Query 53782 TAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAG----AAGAAGGTCAAGG 53837 | ||| ||||| | ||||| || | ||||| | | |||| || | Sbjct 438809 CGAGGAGCTGTATACCAAGTACG-AG---AAGGCCGGCATGGGTCGTAAGACTATCCCTG 438864 Query 53838 CGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGT 53897 | | | | ||| || || ||| |||||||| | || || ||||| |||| |||| Sbjct 438865 CCCAGTCGCTCTGGTTCGCCATACTCCAGAGCCAGATCGAAACAGGAACTCCGTTCATGC 438924 Query 53898 GCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATC 53955 |||||| ||| | ||||| |||| ||||| | ||| | || |||||| || Sbjct 438925 TCTACAAAGATGCTTGCAACGCGAAGTCGAACCAACAAAACCTTGGGACCATCAAGTC 438982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGACATGAGTG 55787 |||| || | ||| ||| || |||||||| || |||| | || |||||| | Sbjct 439741 TCAAAGACCTATACAAGACAGTTTGGGAGATCAAGCAAAAGAACATTATCGACATGGCGG 439800 Query 55788 CTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCCTT 55847 | || || ||| | |||||||||||| || || || ||||| | ||| ||| | || Sbjct 439801 CGGACCGCGGTATTTTCATCGACCAGTCGCAATCGCTTAACATATACATCGAGCAGCCGA 439860 Query 55848 CACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTA 55907 | | | ||| | | | |||||||| |||||||||||||| ||| | || || ||| Sbjct 439861 CGTTCGGTAAGCTCACCAGCATGCACTTCTACGGGTGGAAGAAAGGATTGAAAACTGGTG 439920 Query 55908 TGTACTATCTGCGGAC 55923 | ||||| ||||| || Sbjct 439921 TTTACTACCTGCGCAC 439936 >seq3 Length=3518759 Score = 134 bits (148), Expect = 2e-26 Identities = 295/441 (67%), Gaps = 1/441 (0%) Strand=Plus/Plus Query 151866 GCAGCTGAATCCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGG 151925 || |||||| ||||| || |||||||| ||||||||||| | ||| || | | | || Sbjct 2472214 GCTGCTGAAACCGGTGCCTATGCCCTCGCTGCCGTTGACCAGCACCATGGGGATAGTGGG 2472273 Query 151926 GGCGTAAAACTCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATT 151985 | ||| | |||||| | || || || || | ||| | || ||| | Sbjct 2472274 GATGTAGTAGAACGGCTCGATGATCTGGCCCTCCTCGTTTTGGTACTGCAGCACGTTGTC 2472333 Query 151986 GTCAGCCGGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGA 152045 ||| || |||| ||| | | || || || ||| ||||||||||| || | Sbjct 2472334 GTCCTCCTCCACGAAGATCAGCCTCGTGATGGGCATCAGCTTGGTGAAGATGTAACGCGC 2472393 Query 152046 GCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAG 152105 | || |||||||| || || || | || || || ||| | ||||| || | Sbjct 2472394 CGCAGAGGCGTCCTTGCCGCCCTCCTTGCGGCTGCCGAATTGGCCACACGGCTCCAGCAC 2472453 Query 152106 GTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACT 152165 ||| | |||||||| || ||||||| ||| |||| || | || || |||||| Sbjct 2472454 GTTTATGTTGTTGGACCCAACGAAATCCTGCGCCATGTTGATGATGGTCTGCTGCAGCGA 2472513 Query 152166 CGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTT 152225 |||||| |||||||| ||||| | ||||| || | || |||| || |||||||||||| Sbjct 2472514 CGCTTCGCCGTGGTGGTACGCGGAGTGCTCGGCCACATAGCCCGTCAGCTGCGCCACCTT 2472573 Query 152226 CATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTT 152285 || | |||||||| ||||| || || | | ||||||||||||| ||||| Sbjct 2472574 GCACTCGGAGATCAGGTTCCGTTTGAGGCACCCGAACAGCACCTTGCGCTGGCCGGGTTT 2472633 Query 152286 CAAACCGTCCACCACGTGAGG 152306 | | ||||| |||||| |||| Sbjct 2472634 CCACCCGTCGACCACG-GAGG 2472653 Score = 116 bits (128), Expect = 4e-21 Identities = 194/279 (70%), Gaps = 1/279 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||| | | || |||||||| || | || | |||||||| Sbjct 2472377 GTGAAGATGTAACGCGCCGCAGAGGCGTCCTTGCCGCCCTCCTTGCGGCTGCCGAATTGG 2472436 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 |||| |||||||| | ||| | |||||||| || || || | || |||| ||||| Sbjct 2472437 CCACACGGCTCCAGCACGTTTATGTTGTTGGACCCAACGAAATCCTGCGCCATGTTGATG 2472496 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || || || ||| || || ||||| ||||| | ||||| ||||| |||||| Sbjct 2472497 ATGGTCTGCTGCAGCGACGCTTCGCCGTGGTGGTACGCGGAGTGCTCGGCCACATAGCCC 2472556 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | |||||| |||||||| || || |||||||| |||||||| | | | |||| Sbjct 2472557 GTCAGCTGCGCCACCTTGCACTCGGAGATCAGGTTCCGTTTGAGGCACCCGAACAGCACC 2472616 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG 117583 |||||||| | || ||| || || ||||| ||||| Sbjct 2472617 TTGCGCTGGCCGGGTTTCCACCCGTCGACCACG-GAGGG 2472654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547212696183400