Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10 96.9 4e-15 seq2 91.5 2e-13 >seq10 Length=1797577 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 24129 ATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAAC 24188 || |||||| | ||||| |||||| || ||||| || ||| | ||||||| ||| Sbjct 1461230 ATGAAACATCCAAAATCTGCGTGTAGTCCTTCGTCCCTTGCAATAAGTTCGTTGCTAAAG 1461289 Query 24189 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA 24248 || | || ||||| || ||||| ||||||||||||||||| | ||| ||||||| Sbjct 1461290 GTCAACCCTGGCATGAGACCACGTTTTTTAAGCCAAAATATAGCACAAAAACTTCCAGAA 1461349 Query 24249 AAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 || || || ||||| ||||| ||| | |||| Sbjct 1461350 AAAAATATGCCTTCAACTGCTGCATATGCAA 1461380 >seq2 Length=821816 Score = 91.5 bits (100), Expect = 2e-13 Identities = 440/692 (64%), Gaps = 6/692 (1%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || ||||| || |||||||||| | || ||| | || ||||| |||||||||| | | Sbjct 732627 TCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGGGACACATCAGTGTC 732686 Query 54011 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-AA 54069 || || |||| || || || |||||||| || ||||||||||| | ||| ||| || Sbjct 732687 CAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCCACAAAGC-ATAGAA 732745 Query 54070 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 54129 | ||| | || | | |||||| || ||||| | || || || |||| Sbjct 732746 CAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAGTCCAGAAAGTCCAT 732805 Query 54130 AATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCC 54189 ||| |||| |||||| || || | ||| |||| | || || ||| || || Sbjct 732806 AATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTACGCTTGCCACCACC 732865 Query 54190 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 54249 ||| || | || | ||| ||| || | | | |||||||| | | ||| ||| Sbjct 732866 CTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGGACTAGACCGTTGCT 732925 Query 54250 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACC 54309 || ||||| || || || |||||||| | || || | | || || Sbjct 732926 CTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCTGATCTTGTGACAAGCAAGGCC 732985 Query 54310 TATCCCCCCTGC-CATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 54368 || || || || || || | || || || || | | || || || | || || Sbjct 732986 AATACCACCAGCACACTTGCTA-ATGAAGGCACACTGGGTCAAAGTCTCGAAAATACCAG 733044 Query 54369 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 54428 | | |||||| |||||| |||| ||||| || ||||| || | ||| ||| | Sbjct 733045 CCAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGGACATCTGAGGTCGAGGAGTAC 733104 Query 54429 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 54488 | | || ||||| |||| || || || || | || | | | | | ||| | Sbjct 733105 CGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAAGTACTTCTGACTCATCAAGTGGTAGG 733164 Query 54489 TCTCGATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATG 54547 ||| || | || || || ||| || || || || | | ||||||||||||||| Sbjct 733165 TCTGAATGGTACGCTCAATGTCACCAGTG-TGGATACCAGCAGATACACGCATTAACATG 733223 Query 54548 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTT 54607 || ||||| | || || ||||||| ||||| || || ||||| |||||||| Sbjct 733224 TGTTGAGGACGCTCCACTATCTTGTCATTTATACGAAGTAAATAGGAACGCTCCAAAGTC 733283 Query 54608 TTAAAACCAAAATAGTTGTATGAAAAGTCTCG 54639 || |||||||| |||| ||| |||||| || Sbjct 733284 TTCAAACCAAAGTAGTCGTACTGAAAGTCACG 733315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721496098720