Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 125 7e-24 seq11 104 2e-17 >seq10 Length=1797577 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || ||||||||| | || || || ||| | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 1344276 GACACTATCGAAAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1344218 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || ||| |||| || | || || | |||||||| Sbjct 1344217 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAA 1344158 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| || || || ||||| ||||| |||||||| || Sbjct 1344157 CATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGG 1344110 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || || || ||||||||| | || || || ||| | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | ||||| |||||| ||| || | ||||| ||||| || ||| | ||||| Sbjct 1344048 GACACTATCGAAAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1343990 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || || || ||| |||| || | || || | |||||||| Sbjct 1343989 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAA 1343930 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| || || || ||||| || || |||||||| ||| Sbjct 1343929 CATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGGC 1343881 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || || ||||||||| | || || || ||| ||||| | | ||||| |||||| ||| Sbjct 1344537 GGTAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACTATCGAAAACG-TCAAGGCAAA 1344479 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| ||||| || ||| | |||||||| || | |||| || || || || Sbjct 1344478 GATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCA 1344419 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 | |||| || | || || | ||||||||||||||||||||| ||| || || || Sbjct 1344418 GTTGGAAGATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGCACTCTCCACCT 1344359 Query 40896 AGTGTTGCGCTTGAGGGGCGG 40916 ||| ||||| |||||||| || Sbjct 1344358 AGTTTTGCGTTTGAGGGGTGG 1344338 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || || ||| | || ||||| || ||||| || ||||||||||| || ||| Sbjct 1461372 GCAGCAGTTGAAGGCATATTTTTTTCTGGAAGTTTTTGTGCTATATTTTGGCTTAAAAAA 1461313 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 || || |||||||| || |||| || |||||||| || || | |||||||| || || Sbjct 1461312 CGTGGTCTCATGCCAGGGTTGACCTTTAGCAACGAACTTATTGCAAGGGACGAAGGACTA 1461253 Query 117173 CATTGCGACTTTGCCTGTTT 117192 || || |||| ||||| Sbjct 1461252 CACGCAGATTTTGGATGTTT 1461233 >seq11 Length=827912 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| | ||||| |||||||| || | || || || || Sbjct 716004 AAGATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCC 715945 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| |||||| || || | ||||| ||||| || ||| | ||| Sbjct 715944 AGTGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 715885 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || | |||| || || || ||| |||| || | || || | |||||| Sbjct 715884 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTAC 715825 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||||| || || ||| |||| | || |||||||| || Sbjct 715824 AACATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGG 715775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219109836640