Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq10 98.7 9e-16 seq11 84.2 2e-11 >seq10 Length=1797577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || | || | ||| || | ||||| ||| ||| || || |||||||| || Sbjct 1344108 TACCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAG 1344167 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | ||| || ||||| |||| | ||||||||| || || | Sbjct 1344168 ACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGG 1344227 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || ||| || || | ||||| ||||| || ||| | Sbjct 1344228 GAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344287 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || || || || ||||| || |||||||| ||||| Sbjct 1344288 CCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 || || | ||||| ||| ||| || || |||||||| || || || || ||| Sbjct 1343897 AAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCT 1343956 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || | ||| || ||||| |||| | ||||||||| || || || || ||||||||||| Sbjct 1343957 TCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 1344016 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || ||| || || | ||||| ||||| || ||| ||||| | ||| | || Sbjct 1344017 TGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTC 1344076 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || |||||||| ||||| Sbjct 1344077 TTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 >seq11 Length=827912 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 || || |||| ||| ||| || || |||||||| || || || || ||| || Sbjct 715793 ACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 715852 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 | ||| || ||||| |||| | ||||||||| || || || || ||||||||||| Sbjct 715853 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 715912 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| ||||| || ||| ||||| | || | ||||| Sbjct 715913 ATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCCAATGTAATGGTTTTA 715972 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||||| || ||||||||||| Sbjct 715973 CCCGTTAAGGTTTTAACGAAAATCTGCAT 716001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830325977688