Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq10 127 2e-24 seq11 98.7 8e-16 >seq10 Length=1797577 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| ||||| | ||| || | ||| || || ||||||||||| ||||||||||| Sbjct 1343881 GCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 1343940 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || |||| || || || || || ||||| ||||| ||||| || || Sbjct 1343941 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344000 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | ||||||||||||| || ||| ||| || | | |||| | |||||| Sbjct 1344001 AATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344060 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || ||||| || || |||||||| ||||| |||||||| Sbjct 1344061 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | || || | ||| || || ||||||||||| ||||||||||| | Sbjct 1344110 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1344169 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| || || || || || ||||| ||||| ||||| || || Sbjct 1344170 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344229 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || ||| ||| || | | |||| | ||||||| Sbjct 1344230 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344289 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || ||||| || || |||||||| ||||| |||||||| Sbjct 1344290 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 95.1 bits (104), Expect = 1e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | || || | ||| || |||||||||||||| ||||||||||| | Sbjct 1344338 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 1344397 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| || || || || || ||||| ||||| ||||| || || Sbjct 1344398 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344457 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || ||| ||| || | | |||| | ||||||| Sbjct 1344458 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344517 Query 45290 TCCACGGTAATCGTCTTGCC 45309 |||| ||| || ||||| || Sbjct 1344518 TCCAAGGTGATGGTCTTACC 1344537 >seq11 Length=827912 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||| | || || || || || || ||||||||||| ||||||||||| | Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || |||| || || || || || ||||| ||||| ||||| || || Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||||||||||| || || ||| || | | |||| | ||| ||| Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACC 715954 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343 |||| ||||| || || ||||| | || || || || || ||||| |||||| Sbjct 715955 TCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTTGCCT 716008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395075132590294