Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq11 86.0 6e-12 >seq10 Length=1797577 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || || || || |||||| | || || || || | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| ||||| || ||| | ||||||||| || | || || ||||| Sbjct 1344048 GACACTATCGAAAACGTCAAGGCAAAGA-TCCAGGACAAGGAGGGTATTCCCCCAGACCA 1343990 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||| | || || ||||| || ||||||||||| Sbjct 1343989 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGA 1343954 Score = 104 bits (114), Expect = 2e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || || || || |||||| | || || || || | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||||| ||||| || ||| | ||||||||| || | || || ||||| Sbjct 1344276 GACACTATCGAAAACGTCAAGGCAAAGA-TCCAGGACAAGGAGGGTATTCCCCCAGACCA 1344218 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||||||| | || || ||||| || ||||||||||| Sbjct 1344217 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGA 1344182 >seq11 Length=827912 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| || || | || || ||||| || || | || ||||| || Sbjct 716004 AAGATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCC 715945 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | |||||| ||||| | || ||||||||| || | || || ||| Sbjct 715944 AGTGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 715885 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || || ||||| || ||||||||||| | || || || || Sbjct 715884 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTAC 715825 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| ||| | || || | ||||||| |||| Sbjct 715824 AACATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGGTA 715773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766321990880