Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 105 1e-17 seq10 96.9 5e-15 >seq2 Length=821816 Score = 105 bits (116), Expect = 1e-17 Identities = 456/713 (64%), Gaps = 6/713 (1%) Strand=Plus/Plus Query 79840 TCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACAT 79899 ||||||| || |||| |||||||| || ||||||||||| | ||| ||| | || Sbjct 732606 TCGTATTTGGTGTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAGCCACGGCAC 732665 Query 79900 TCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCA 79959 || || |||||||||| | ||| || || | || || || |||||||| || ||| Sbjct 732666 TCATCGGGACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCA 732725 Query 79960 GGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTT 80018 |||||||| | ||| ||| || | ||| | || | | ||||| || ||||| Sbjct 732726 GGAATCCACAAAGC-ATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTT 732784 Query 80019 TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAAC 80078 | || || || ||||||| |||| |||||| || || | ||| ||||| | Sbjct 732785 GCGCAAGTCCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGA 732844 Query 80079 TCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAA 80138 || || ||| || ||||| || | || | ||| ||| || | | | || Sbjct 732845 ACCTTTACGCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAA 732904 Query 80139 CATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACG 80198 |||||| | | ||| ||| | || ||||| || || || |||||||| | Sbjct 732905 CATTGGGACTAGACCGTTGCTCTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCT 732964 Query 80199 AATATTACTAATTGATAGACCTATTCCCCCTGC-CATTTTAGAGATTAATGCGCATCGTT 80257 || || | | || || || || || || || || | || || || || | Sbjct 732965 GATCTTGTGACAAGCAAGGCCAATACCACCAGCACACTTGCTA-ATGAAGGCACACTGGG 733023 Query 80258 TTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAG 80317 | || || || | || || | | | ||||| |||||| |||| ||||| || | Sbjct 733024 TCAAAGTCTCGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGG 733083 Query 80318 ACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 80377 |||| || | ||| ||| || | || ||||| |||| || || || || | | Sbjct 733084 ACATCTGAGGTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAAGTACT 733143 Query 80378 TTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC-CCATTGATGAATTCCT 80436 | | | || | | ||| |||| ||| | || || || ||| || || || || Sbjct 733144 TCTGACTCATCAAGTGGTAGGTCTGAATGGTACGCTCAATGTCACCAGTG-TGGATACCA 733202 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 | | ||||||||||||||||| ||||| | || || ||||||| |||||| | Sbjct 733203 GCAGATACACGCATTAACATGTGTTGAGGACGCTCCACTATCTTGTCATTTATACGAAGT 733262 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 80549 || || || |||||||| || |||||||| |||| ||| |||||| || Sbjct 733263 AAATAGGAACGCTCCAAAGTCTTCAAACCAAAGTAGTCGTACTGAAAGTCACG 733315 >seq10 Length=1797577 Score = 96.9 bits (106), Expect = 5e-15 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Plus Query 49954 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 50013 || |||||| | ||||| ||| || || ||||| || ||| ||||||||| ||| Sbjct 1461230 ATGAAACATCCAAAATCTGCGTGTAGTCCTTCGTCCCTTGCAATAAGTTCGTTGCTAAAG 1461289 Query 50014 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CCAG 50071 || | || ||||| || ||||| ||||||||||||||||| | | |||| || |||| Sbjct 1461290 GTCAACCCTGGCATGAGACCACGTTTTTTAAGCCAAAATATAG-CACAAA-AACTTCCAG 1461347 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAAC 50105 |||| || || ||||| ||||| ||| | ||||| Sbjct 1461348 AAAAAAATATGCCTTCAACTGCTGCATATGCAAC 1461381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268674302960