Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq11 111 1e-19 seq10 109 5e-19 >seq11 Length=827912 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| |||||||| ||||| |||||||| | || | || || || || Sbjct 716004 AAGATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCC 715945 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || |||| || || || ||||||||||||||||| || || Sbjct 715944 AGTGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 715885 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || ||||| || || ||||| || ||| || || | || || ||| Sbjct 715884 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTAC 715825 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || | ||||||||| | || ||| | || ||| Sbjct 715824 AACATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGGT 715774 >seq10 Length=1797577 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || ||||| || |||| | || ||||| ||| | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| || || ||||||||||||||||| || || || Sbjct 1344276 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1344217 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| || ||| || || | || || |||||| Sbjct 1344216 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1344157 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || | || |||||||||| ||| | || ||| Sbjct 1344156 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGGT 1344109 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||| | || ||||| || |||| | || ||||| ||| | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| ||| || || ||||||||||||||||| || || || Sbjct 1344048 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1343989 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || ||||| || || ||||| || ||| || || | || || |||||| Sbjct 1343988 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1343929 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || | || ||||||| || ||| | || || Sbjct 1343928 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGG 1343882 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 ||||| || |||| | || ||||| ||| ||| || | || | |||| ||| Sbjct 1344537 GGTAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACTATCGAAAACGTCAAGGCAAAG 1344478 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||||||||| || || || || ||| | || ||||| || || ||| Sbjct 1344477 ATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCAG 1344418 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 || || ||| || || | || || |||||||| || || || ||| | || || Sbjct 1344417 TTGGAAGATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGCACTCTCCACCTA 1344358 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 |||||||| ||| | || ||| Sbjct 1344357 GTTTTGCGTTTGAGGGGTGGT 1344337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727928383910