Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2 196 6e-45 seq9 82.4 9e-11 >seq2 Length=821816 Score = 196 bits (216), Expect = 6e-45 Identities = 1060/1669 (64%), Gaps = 58/1669 (3%) Strand=Plus/Plus Query 113588 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 113647 |||| || || | |||||| | || ||||| || |||| ||||||| |||| | ||| Sbjct 731496 GCCTGTGTGCGTAAGTAGTAGGTACCGGTCTTCAGACCCTTCTTCCAGCCATAGAAGTGC 731555 Query 113648 ATCGAGGACAACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGA 113707 || || || |||| || || || || | | ||| || | ||| || ||| Sbjct 731556 ATACTGGTCAGCTTGCCGAAAGTAGGCTGGTCAAGGTAGATATTGAGCGATTGTGACTGA 731615 Query 113708 TCGATGAAGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCAC 113767 || ||||| ||||| ||||| ||||| || || | |||| ||| |||||||| Sbjct 731616 TCAATGAAAATACCACGGTCCGCAGCCATGTCGATAATGCTCTTCTGCTTAATTTCCCAA 731675 Query 113768 ACAGTTCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCA 113827 || || |||| |||| ||| || | | |||||| || | || | || | ||| | Sbjct 731676 ACGGTCTTGTAAAGGTCCTTGATGTGCTGAGGGATACCCTCAATGT----GACGAAGCGA 731731 Query 113828 CCCGCCTTGACCATGAGA----TCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAG 113883 |||| | | || | ||||||||| | | ||| || |||| | | || Sbjct 731732 CCCGTTGTAAGCAATCAACTTCTCCTTCATAGCGTCATCCCAAAGGCCAAGGTCTACCAG 731791 Query 113884 ATCCTCCACGAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATA 113943 ||| || | ||| ||||| |||| || ||||| || ||| | || Sbjct 731792 ATCACGCAGTAAATGAGGGTTGACCACAAAGAATTCACCACTCAGCACGCGGCGGTAGTA 731851 Query 113944 GATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGC 114003 ||||||| | ||||| ||||| || |||| ||||| |||| || || | ||||| || Sbjct 731852 GATATTGCTGGTGTAGGGCTCGAACGACTCGTTGTTGCCCAGAATCTGTGATGTGGATGC 731911 Query 114004 TGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCC---TTTTCCCTAATGCGTTC 114060 ||| |||||||| |||| || || ||| || | |||| ||| || || || | Sbjct 731912 TGTTGGCATGGGCGCCAGGAATAGCGAGTTGCGTA-ACCCGTGTTTGGCC--ATACGCTG 731968 Query 114061 CTTGAGGGCGTCCCAGTCGTAGTTGAGCT-TTGTCTCCCCCTGC----CACATATCAAAC 114115 ||||||| | |||||||| | | | | ||||| | ||| || | |||||| Sbjct 731969 CTTGAGGCCATCCCAGTCCCA--TAACTTGTTGTCAACAGTTGCACCCCAAAGGTCAAAC 732026 Query 114116 TGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCC 114175 || || |||| ||||| ||||| || || | ||||||| | || | ||| Sbjct 732027 TGAAGCTTACCCTGGGACGCTGGTGACCCTGGGTAACTCTCGTAAGTACCATACTTCTCA 732086 Query 114176 GCCAATTCGGAGCTCG---CCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA 114232 |||| | || | | | || | ||| || || |||||||| || ||| Sbjct 732087 GCCAGT---GAAATTGATTCATCCAAACACCCGTAGTATATAGTCTCAAATATACGACGG 732143 Query 114233 TTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGC 114291 |||| |||| ||||| ||||| ||||| | || ||| ||| || || ||| || Sbjct 732144 TTCAGCTCCTTAGCCTCCTCGGACTCAAATG-GATAACGCATCAACATGAAGGTATCAGC 732202 Query 114292 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTC--TCATATTAGACTTTCGAGCGGTC 114349 |||||| || || |||| ||||| || | || | | || | | || || || | Sbjct 732203 GAGACCCTGAACGCCGACACCAATGGGCCTGTGGCGGTGATTTGATACCTT-----GGCC 732257 Query 114350 TCC---ACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTT 114406 || ||||| || | || | ||| || ||| | || || || | ||| | || Sbjct 732258 TCAGGAACGGGGTAGTAGTTACGATCAATGACCTTGTTCAGGTTGTAGGTAATCACACGA 732317 Query 114407 GTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGA 114466 | | || | ||||| | | | || | | |||| | | |||||| | ||| Sbjct 732318 GCAACGTCGTACAGCTTCTTGAAGTCGTAGGTCTTGTTCTCCTTGTCCACATACATGGGA 732377 Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 || || ||||| |||| ||||| |||| ||| || | ||||||| | ||| Sbjct 732378 AGTGCAATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGATGTGTACTGAACAATC 732437 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || ||||| || || ||||| || |||| |||| || || ||||| | || Sbjct 732438 TCGCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTGGTTCGACTTGGCATTG 732497 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATA--G 114644 || |||||||| || ||||| | || | || ||||| | || |||| |||| | Sbjct 732498 CAAGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTG--ACTTTGCAATATGG 732555 Query 114645 CCTTCCAGACA-TCGGCGGCTGGCACAGTGGCGTTGGCTC--GCCCCTCCTCCTCGTACT 114701 | ||| | || | | |||| | ||| | | | | | |||||| |||||| | Sbjct 732556 CAAACCACAGGGTCTGTG-CTGGGATAGT--CTTACGACCAAGACCCTCCATCTCGTATT 732612 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 | ||||| ||||| || ||||| |||||| | || | | || | || ||| | Sbjct 732613 TGGTGTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGG 732672 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | || | || | ||| | ||| ||||||||||||||| || ||||| || |||| Sbjct 732673 GACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCC 732732 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | | ||| |||| | ||| || ||||||||| ||| | || || || ||||| | Sbjct 732733 ACAAAGCATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAGT 732792 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 ||| ||||||||| || || || ||||| || || ||||| | || | || || |||| Sbjct 732793 CCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTAC 732852 Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | |||| |||||| ||||| | || |||| || |||| || | |||||| | Sbjct 732853 GCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGGA 732912 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCAT 115058 | ||| | | ||| || || || ||||| || | |||| ||| ||| | Sbjct 732913 CTAGACCGTTGCTCTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCTG--ATCTT 732970 Query 115059 G-GATGTGC-ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACT 115116 | || || | |||||||| || || ||||| || || |||| || | | | Sbjct 732971 GTGACAAGCAAGGCCAATACCACCAGCACACTTGCTAATGAAGGCACACTGGGTCAAAGT 733030 Query 115117 GCCGTAGATCCCGTCGATCGAGTCACCCTT-ATTTGCGATAAGGAAGCAGCTCGACATTT 115175 || | || || | | |||||| |||| || | | ||| ||| || || ||||| | Sbjct 733031 CTCGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAA-GAAACAACTGGACATCT 733089 Query 115176 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAA 115224 | || | || ||||| | | ||| | ||| || ||||| || |||| Sbjct 733090 GAGGTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAA 733138 >seq9 Length=2593320 Score = 82.4 bits (90), Expect = 9e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171875 AGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATGAGACGCGTCCCA 171934 || || ||||||||||| | || | ||| ||||| || |||||| ||| | ||| Sbjct 1028122 AGCTTGGTGAAGATGTAACGCGCTGCAGATGCATCCTTACCACCCTCCTTACGGCTACCA 1028063 Query 171935 AATTGACCACACGGTTCAAGGAGATTGATATTGTTTGAACCCATGTAGTCATTGGCCAAC 171994 || ||||| || ||||| | | ||||||||||| || || | ||| | |||| Sbjct 1028062 AACTGACCGCATGGTTCCAACACGTTGATATTGTTGGACCCTACAAAGTTCTGTGCCATA 1028003 Query 171995 TTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGACTTGTCCGCGACA 172054 |||| ||| || | || || |||| || || ||||| || || | ||||||||| Sbjct 1028002 TTGATAATGGTTTGTTGCAGCGAAGCTTCTCCATGGTGGTATGCAGAGTGTTCCGCGACA 1027943 Query 172055 TACGCCGCCAACTGTGCCACCTT 172077 || | | | |||||||||||| Sbjct 1027942 TAACCTGTGAGCTGTGCCACCTT 1027920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353495463120