Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10 104 2e-17 seq11 98.7 9e-16 seq2 86.0 6e-12 >seq10 Length=1797577 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || ||||| || | || | ||| ||| || || || ||||| || | Sbjct 1344110 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1344169 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || | ||| || ||||| ||||||| |||||||| || || || Sbjct 1344170 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344229 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | ||||| ||||| | ||| || Sbjct 1344230 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344289 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || ||||| || |||||||| ||||| Sbjct 1344290 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126922 CTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTA 126981 ||| || || || ||||| || || ||| ||| ||| || | ||| || ||||| | Sbjct 1343917 CTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAA 1343976 Query 126982 GATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTG 127041 |||||| |||||||| || || || || |||||||||||| ||| || ||||| | Sbjct 1343977 GATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTT 1344036 Query 127042 TTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 127101 ||||| ||||| | ||| || || | ||| | || || || || ||||| || || Sbjct 1344037 TTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGAC 1344096 Query 127102 AAAAATCTGCAT 127113 |||||| ||||| Sbjct 1344097 AAAAATTTGCAT 1344108 >seq11 Length=827912 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | || || | || ||||| | ||| ||| || || || ||||| || | Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || | ||| || ||||| ||||||| |||||||| || || || Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| ||| || ||||| | ||||| ||||| | ||| || Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACC 715954 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| || || | ||||| || ||||||||||| Sbjct 715955 TCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCAT 716001 >seq2 Length=821816 Score = 86.0 bits (94), Expect = 6e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 145851 ATTTAGAGATTGGCTCTGATCAATGAAAGGAGCCCGGTCGGCGGCCATGTCTATCATGCA 145910 ||| || ||||| ||||||||||||| | | ||||| || |||||||| || |||| Sbjct 731597 ATTGAGCGATTGTGACTGATCAATGAAAATACCACGGTCCGCAGCCATGTCGATAATGCT 731656 Query 145911 CTTTGATTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTC 145970 ||| ||||||||||| |||| || | || ||||||| |||||| || || | || Sbjct 731657 CTTCTGCTTAATTTCCCAAACGGTCTTGTAAAGGTCCTTGATGTGCTGAGGGATACCCTC 731716 Query 145971 AATGT 145975 ||||| Sbjct 731717 AATGT 731721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500716787360