Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq10 156 1e-32 seq11 122 2e-22 >seq10 Length=1797577 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||||||||| |||||| |||| ||||||||||| ||| || | ||||||||| Sbjct 1343900 ACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1343959 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || ||||| | |||||||||||| || ||| || || ||||| Sbjct 1343960 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344019 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||| ||| ||||| ||||| | | || || ||||| ||||| |||||| Sbjct 1344020 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344079 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| Sbjct 1344080 CCAGTAAGAGTCTTGACAAAAATTTG 1344105 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||||||||| |||||| |||| ||||||||||| ||| || | ||||||||| Sbjct 1344128 ACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1344187 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || ||||| | |||||||||||| || ||| || || ||||| Sbjct 1344188 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344247 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||| ||| ||||| ||||| | | || || ||||| ||||| |||||| Sbjct 1344248 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344307 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||||||||| Sbjct 1344308 CCAGTAAGAGTCTTGACAAAAATTTG 1344333 Score = 131 bits (144), Expect = 4e-25 Identities = 138/182 (76%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || ||||||||||| |||||| |||| ||||||||||| ||| || | ||||||||| Sbjct 1344356 ACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCC 1344415 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 | |||||| || || ||||| | |||||||||||| || ||| || || ||||| Sbjct 1344416 AACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGG 1344475 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||| ||| ||||| ||||| | | || || ||||| ||||| |||||| Sbjct 1344476 ATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGATGGTCTTA 1344535 Query 199601 CC 199602 || Sbjct 1344536 CC 1344537 >seq11 Length=827912 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 |||||||| |||||| |||| ||||||||||| ||| || | |||||||||| |||| Sbjct 715799 TGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACGTACGACCATCTTCCAACTGC 715858 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || ||||| | |||||||||||| || ||| || || ||||| ||||| Sbjct 715859 TTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTG 715918 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||| || ||||| ||||| | | || || ||||| || || || |||||||| Sbjct 715919 GCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCCAATGTAATGGTTTTACCCGTT 715978 Query 199607 AGAGTTTTCACAAAAATTTG 199626 | ||||| || ||||| || Sbjct 715979 AAGGTTTTAACGAAAATCTG 715998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921388530938