Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10 102 8e-17 seq11 100 3e-16 >seq10 Length=1797577 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || ||||||||| | || || ||| ||| | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||| |||| ||||| ||||| |||||| | ||||| Sbjct 1344276 GACACTATCGAAAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1344218 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || ||| |||| || | || || | |||||||| Sbjct 1344217 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAA 1344158 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| || || || | || |||||||||| || || Sbjct 1344157 CATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGG 1344110 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || ||||||||| | || || ||| ||| | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | || | ||| |||| ||||| ||||| |||||| | ||||| Sbjct 1344048 GACACTATCGAAAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 1343990 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || ||| |||| || | || || | |||||||| Sbjct 1343989 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAA 1343930 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| || || || | || | |||||||| || ||| Sbjct 1343929 CATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGGC 1343881 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 || |||||||| | ||| ||||||||||| || ||||| || |||||||| || |||||| Sbjct 1461257 CCTTCGTCCCTTGCAATAAGTTCGTTGCTAAAGGTCAACCCTGGCATGAGACCACGTTTT 1461316 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGC 133031 || ||||||||||| || ||||| || ||||| || | ||| || || || || Sbjct 1461317 TTAAGCCAAAATATAGCACAAAAACTTCCAGAAAAAAATATGCCTTCAACTGCTGC 1461372 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAA 38329 || || ||||||||| | || || ||| ||| ||||| | | ||||| | || | ||| Sbjct 1344537 GGTAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACTATCGAAAACG-TCAAGGCAAA 1344479 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||| ||||| ||||| |||||| | ||||| ||||| | || | || || || || Sbjct 1344478 GATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCA 1344419 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGA-AGCGACGCTGCATT 38448 | |||| || | || || | |||||||||||||| ||||| ||| || || || Sbjct 1344418 GTTGGAAGATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGC-ACTCTCCACC 1344360 Query 38449 TGGTGCTGCGTTTGAGAGGCGG 38470 | || |||||||||| || || Sbjct 1344359 TAGTTTTGCGTTTGAGGGGTGG 1344338 >seq11 Length=827912 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| | ||||| |||||||| || | || || ||| || Sbjct 716004 AAGATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCC 715945 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | || | || |||| ||||| ||||| |||||| | ||| Sbjct 715944 AGTGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGAC 715885 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | || || || ||| |||| || | || || | |||||| Sbjct 715884 CAGCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTAC 715825 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| || || ||||| || || |||||||| || || Sbjct 715824 AACATCCAGAAGGAGAGTACTCTCCATTTAGTTCTACGTTTGAGGGGTGG 715775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172712469760