Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq9 159 3e-33 seq11 136 3e-26 >seq9 Length=2593320 Score = 159 bits (176), Expect = 3e-33 Identities = 402/603 (67%), Gaps = 11/603 (2%) Strand=Plus/Plus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || |||||||| | ||| || || ||||| ||| | |||| | || || || | | Sbjct 2152501 GTACCACCACCAAGATCGAAGATGAGTACGTTCTTCTCTTCAGATCCCTTCTTGTCCAAA 2152560 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || |||| || ||||| || ||||| || || || | || ||| || ||||||||| Sbjct 2152561 CCGTAGGCAATGGCGGCAGCGGTGGGTTCGTTGATGATACGCATAACGTTGAGACCAGCA 2152620 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || | || || || || || || || || || || ||||| || || || || || || Sbjct 2152621 ATGGTACCAGCGTCCTTGGTAGCCTGCCTCTGGGAGTCGTTGAAGTAGGCGGGTACGGTG 2152680 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATA-AGCGCTTGCCGTTTGTTTCATTTTACT 518355 || |||||||| |||| ||||| | || ||| | || ||| |||||||| | Sbjct 2152681 ATGACGGCATCCTTTACGGTCTTACCCAGGTACAGCTC-GGCAATTTCCTTCATTTTGAT 2152739 Query 518356 TAAAATCATTGATGAAATTTGTTCTGG--GGAATATTGCTTGGATTCATTTTGATATGAT 518413 | | ||| |||||||||| |||||| |||| | ||| || || | | Sbjct 2152740 GAGCACCATGGATGAAATTTCTTCTGGGTGGAAGCT--CTTCTTTTGTCCCTGGAAGGTG 2152797 Query 518414 ACTTCAAAATATGGTTTATTACCAACA---TTAATAACTTTAAATGGCCAGTATTTCATA 518470 || || | ||||||| ||| ||| || | || || |||||||||| |||||| Sbjct 2152798 ACCTCGATGGTTGGTTTACCACCGACACCGTTGGTGACCTTGAATGGCCAGTGTTTCATG 2152857 Query 518471 TCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAAAAT 518529 || || || | | ||| | ||||| || ||||| | | ||| || || || | Sbjct 2152858 TCATCCTGTACGGTCTTGTC-GTCGAATCTCCTTCCAATAAGCCTTTTAGCGTCGAATAC 2152916 Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589 || || || ||| ||| |||| | ||||| ||||| || || ||| |||| || Sbjct 2152917 GGTGTTCTCAGGGTTACGTGCTTCTTGGTTCTTGGCGGCATCACCGATAAGACGTTCGGT 2152976 Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 || || || | || || || || ||||| | |||||| || ||||| | ||| ||||| Sbjct 2152977 GTCGGTGAAGGCTACGTAGGAGGGTGTTGTTCTATTACCCTGGTCATTAGGAATGATTTC 2153036 Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 518709 || || | | |||||||||||||| | || || || || |||||||| || Sbjct 2153037 GACATTGTTGTCCTTGTATACACCTACACAAGAGTAGGTAGTACCCAAGTCAATACCGAT 2153096 Query 518710 AGC 518712 ||| Sbjct 2153097 AGC 2153099 >seq11 Length=827912 Score = 136 bits (150), Expect = 3e-26 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| |||||||| | || |||||||| ||||| || || |||||||| || ||||| Sbjct 776877 TTTTTCTCAAGACCGAAAGCCAAAGCAGCGGCAGTCGGCTCGTTAATAATCCTTAAAACG 776936 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 | | |||||||||| | || || || || || || || || ||||| ||||| |||||| Sbjct 776937 TCCAAACCAGCAATTTTGCCAGCGTCCTTGGTAGCCTGCCTCTGTGAGTCGTTGAAATAT 776996 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAA 518324 ||||| ||||||||||| || | |||||||| |||||| Sbjct 776997 GCAGGCACAGTAATAACAGCCTTAGTTACTTTCCTACCAA 777036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780821705273884