Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq10 114 8e-21 seq11 100 2e-16 >seq10 Length=1797577 Score = 114 bits (126), Expect = 8e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | |||||| | ||| | || || || ||||| ||||| ||||| || Sbjct 1344110 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1344169 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| || || ||||| || | || ||||||||| | || Sbjct 1344170 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344229 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | | || | || | || ||| || Sbjct 1344230 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344289 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || |||||||| ||||| || |||||| Sbjct 1344290 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCATA 1344337 Score = 113 bits (124), Expect = 3e-20 Identities = 169/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 34746 CAATCA--TTTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGT 34803 |||||| || || |||||||| | ||||| | ||| | || || || ||||| |||| Sbjct 1343871 CAATCACCTTGCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGT 1343930 Query 34804 TATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCT 34863 | ||||| || | | || |||| |||| ||| || || ||||| || | || |||| Sbjct 1343931 TGTAGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCT 1343990 Query 34864 GGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCAC 34923 ||||| | || | ||||||||||| ||||| |||||| | | || | || | Sbjct 1343991 GGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGC 1344050 Query 34924 CGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||| || || | ||| ||||| || || || |||||||| ||||| || |||||| Sbjct 1344051 TGGGCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCATA 1344109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | |||||| | ||| | ||||| || ||||| ||||| ||||| || Sbjct 1344338 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGAC 1344397 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| || || ||||| || | || ||||||||| | || Sbjct 1344398 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344457 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| |||||| | | || | || | || ||| || Sbjct 1344458 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344517 Query 34935 TCGACGGTTATGGTTTTTCC 34954 || | ||| ||||| || || Sbjct 1344518 TCCAAGGTGATGGTCTTACC 1344537 >seq11 Length=827912 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | | ||| || || | || || || ||||| ||||| ||||| || Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || |||| |||| ||| || || ||||| || | || ||||||||| | || Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||||||||| ||||| ||||| | | || | |||| || |||||| Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACC 715954 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || | || |||||||| ||||| | || || || || |||||||| || Sbjct 715955 TCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTT 716004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633544609392