Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 120 3e-22 >seq2 Length=821816 Score = 120 bits (132), Expect = 3e-22 Identities = 600/942 (64%), Gaps = 19/942 (2%) Strand=Plus/Plus Query 47876 AAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTAT 47935 |||||| || ||||| | ||||||||||| ||||| | ||| || || || | || Sbjct 732377 AAGTGCAATTGATGCCAAGTTACATACAGCAACCTCCTCGGGAGATGTGTACTGAACAAT 732436 Query 47936 TTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTT 47992 || ||| || ||| |||| |||||||||| ||| || || || || || Sbjct 732437 CTCGCAACACAGGTTAGAGGATTTAATAGTACCCAGATTCTGCTGGTTCGACTTGGCATT 732496 Query 47993 GTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT-CAATGA 48051 | || || ||||| || |||||||| || | ||||| ||||||||| || |||| | Sbjct 732497 G---CAAGCATCCTTATAGAGCATAAACGGGTTGCCAGTCTCTATCTGACTTTGCAAT-A 732552 Query 48052 TAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATT 48111 | | ||| | ||| || ||| | | | | || ||||||| Sbjct 732553 TGGCAAACCACAGGGTCTGTGCTGGGATAGTCTTACGACCAAGACCCTCCATCTCGTATT 732612 Query 48112 TAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAG 48171 | || |||| ||| || ||||| || | |||| || ||| ||| | || |||| | Sbjct 732613 TGGTGTATAGGGCCTCGAACTCATCACCCCAAACATCATATAAGCCACGGCACTCATCGG 732672 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||||| || ||| || | | | || | ||||||| | || || |||| Sbjct 732673 GACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAACAGGTCAGGAATCC 732732 Query 48232 AAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 | | ||| ||| || ||||| | | | ||| ||| || ||| | | Sbjct 732733 ACAAAGC-ATAGAACAAATCACGGGCGCGAGCTTCCTCAGCACCGTGGTTCTTGCGCAAG 732791 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 || ||||||||||| || |||||||||||||| || | || || || | |||| Sbjct 732792 TCCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGGCAAAGGAACCTTTA 732851 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 || || ||| || || || | ||| | ||||| ||| | | | |||||||||| Sbjct 732852 CGCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATATACGTAACATTGGG 732911 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 || | ||| || | || ||||| || ||| ||| ||||| || || || || Sbjct 732912 ACTAGACCGTTGCTCTTGCCGTTGGTACCACGAATGTAAGCGCCACTGGCCCTGATCTTG 732971 Query 48471 CTAATTGAAATACCTATACCACCTGC-CATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 | | || || |||||||| || || || | || | |||||| | | | || Sbjct 732972 TGACAAGCAAGGCCAATACCACCAGCACACTTGCTA-ATGAAGGCACACTGGGTCAAAGT 733030 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 || |||| || | | ||||| |||| | | || |||||||| ||||| || Sbjct 733031 CTCGAAAATACCAGCCAAGGAGTCATCCTTCATGTCCAGTAAGAAACAACTGGACATCTG 733090 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCT--CT 48647 || || ||| || || || || || |||| |||||| | || | |||| || Sbjct 733091 AGGTCGAGGAGTACCGGAGAAGAACAAGGTGGGAGTCGCATGAGTGAAGTACTTCTGACT 733150 Query 48648 GATAACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGA 48706 || ||| | || || | ||| | || || || ||| || || ||||| ||| Sbjct 733151 CAT--CAAGTGGTAGGTCTGAATGGTACGCTCAATGTCACCAGTG-TGGATACCAGCAGA 733207 Query 48707 TACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATA 48766 ||||||||||||||| | |||||| | || || || |||| |||||| | | ||| Sbjct 733208 TACACGCATTAACATGTGTTGAGGACGCTCCACTATCTTGTCATTTATACGAAGTAAATA 733267 Query 48767 TGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAA 48807 || ||||| || || |||||||| |||| ||| ||||| Sbjct 733268 GGAACGCTCCAAAGTCTTCAAACCAAAGTAGTCGTACTGAAA 733309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108701630960