Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq11 123 2e-23 seq10 105 5e-18 >seq11 Length=827912 Score = 123 bits (136), Expect = 2e-23 Identities = 178/250 (71%), Gaps = 1/250 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||||| ||||||||| || ||| || || || || ||||| || | Sbjct 715775 CCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 715834 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 715835 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 715894 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || || || ||| |||| | ||||||| | || || Sbjct 715895 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACC 715954 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTAC-GCGAAG 101481 || | || | ||||| || ||||| ||||| || || |||||||| | | |||||| Sbjct 715955 TCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCATCTTGCCTGCGAAG 716014 Query 101482 ATTTGTAAAA 101491 || ||| ||| Sbjct 716015 ATATGTTAAA 716024 >seq10 Length=1797577 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 101237 ACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAA 101296 || || || || || ||||||||||||| || || ||| || || || || ||||| Sbjct 1343876 ACCTTGCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAG 1343935 Query 101297 TCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCG 101356 || | | || | |||| ||||| |||||||| ||||| ||||||||||| || || Sbjct 1343936 TCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCT 1343995 Query 101357 GGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTT 101416 || ||||| || || || || || || ||| || || |||| | |||||| | Sbjct 1343996 GGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGC 1344055 Query 101417 TCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 ||||| || | |||| || || || || | ||| || ||||| || ||||| Sbjct 1344056 TCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || ||||| ||||||| || || ||| || || || || ||||| || | Sbjct 1344110 CCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1344169 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| |||||||| ||||| ||||||||||| || || || ||| Sbjct 1344170 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344229 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || || || || ||| || || |||| | |||||| | ||||| Sbjct 1344230 ATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACC 1344289 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || || | ||| || ||||| || ||||| Sbjct 1344290 TCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396278332384998