Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9 181 7e-40 seq11 91.5 1e-12 >seq9 Length=2593320 Score = 181 bits (200), Expect = 7e-40 Identities = 407/600 (68%), Gaps = 15/600 (3%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || || |||||||| || || ||||| ||| |||||||| ||| | | | || Sbjct 2153099 GCTATCGGTATTGACTTGGGTACTACCTACTCTTGTGTAGGTGTATACAAGGACAACAAT 2153040 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| ||| | |||||||| ||||||||||||||||| || || || | || || Sbjct 2153039 GTCGAAATCATTCCTAATGACCAGGGTAATAGAACAACACCCTCCTACGTAGCCTTCACC 2152980 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || |||| |||||| || ||||| || || | |||| ||| ||| |||| || Sbjct 2152979 GACACCGAACGTCTTATCGGTGATGCCGCCAAGAACCAAGAAGCACGTAACCCTGAGAAC 2152920 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || | || || |||||||| | ||||| | | || || || | || || || | Sbjct 2152919 ACCGTATTCGACGCTAAAAGGCTTATTGGAAGGAGATTCGACGACAAGACCGTACAGGAT 2152860 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAA---TGTTGGTGGTAAACCATATATAGAA 474625 || ||| || ||||| || ||||| | || ||| |||||||||||| || || Sbjct 2152859 GACATGAAACACTGGCCATTCAAGGTCACCAACGGTGTCGGTGGTAAACCAACCATCGAG 2152800 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCA-CCGGAACAAATTTCTTCAATGGTTTT 474684 | | | |||| || || | || || || ||| ||||||| || ||||| | Sbjct 2152799 GTCA-CCTTCCAGGGACAAAAGAAGAGCTTCCACCCAGAAGAAATTTCATCCATGGTGCT 2152741 Query 474685 AGCCAAAATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTA 474742 ||||||||| ||| | |||||| || | ||| |||| |||| ||||| || Sbjct 2152740 CATCAAAATGAAGGAAATTGCCGAGCT-GTA-CCTGGGTAAGACCGTAAAGGATGCCGTC 2152683 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || || || || || || || || || | || || || || || || || | Sbjct 2152682 ATCACCGTACCCGCCTACTTCAACGACTCCCAGAGGCAGGCTACCAAGGACGCTGGTACC 2152623 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||| || ||| | ||||| || || ||||| || || ||||| |||| || Sbjct 2152622 ATTGCTGGTCTCAACGTTATGCGTATCATCAACGAACCCACCGCTGCCGCCATTGCCTAC 2152563 Query 474863 GGTCTTGATAAGAA---TTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 ||| | || ||||| ||||| | ||||| || || | ||||| ||| ||| ||| Sbjct 2152562 GGTTTGGACAAGAAGGGATCTGA-AGAGAAG--AACGTACTCATCTTCGATCTTGGTGGT 2152506 >seq11 Length=827912 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| | ||||| |||||||| || | ||| || || || || ||||| || ||||| Sbjct 715846 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 715905 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTG-TGAAGTTTCAAGGGTAA 480735 ||| || ||||| |||||| ||| ||||| ||| || | | || | ||| | ||| Sbjct 715906 GTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCCAATG-TAA 715964 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | |||||||| || | || ||||||||||| || Sbjct 715965 TGGTTTTACCCGTTAAGGTTTTAACGAAAATCTG 715998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178599472072