Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2 197 2e-45 seq9 104 3e-17 >seq2 Length=821816 Score = 197 bits (218), Expect = 2e-45 Identities = 896/1400 (64%), Gaps = 54/1400 (4%) Strand=Plus/Minus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||||| ||||| || | || |||||| | |||||||| | | | ||| Sbjct 733224 ACATGTTAATGCGTGTATCTGCTGGTATCCACACTGGTGACATTGAGCGTACCATTCAGA 733165 Query 75279 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 75337 | ||| || |||| || | ||| |||| ||| || || || ||| | ||| | Sbjct 733164 CCTACCACTTGATGAGTCAGAAGTAC-TTCACTCATGCGACTCCCACCTTGTTCTTCTCC 733106 Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397 ||||| || |||| |||||||||||||| ||| | | | || ||||| ||||| | Sbjct 733105 GGTACTCCTCGACCTCAGATGTCCAGTTGTTTCTTACTGGACATGAAGGATGACTCCTTG 733046 Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457 ||||| | | ||| | || ||||||| || ||||| ||||| |||||| Sbjct 733045 GCTGGTATTTTCGAGACTTTGACCCAGTGTGCCTTCATTAGCAAGTGTGCTGGTGGTATT 732986 Query 75458 GGGAT-GCACATC-CATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAATGGTC 75515 || | || || || ||| || |||| | || ||||| || || || || Sbjct 732985 GGCCTTGCTTGTCACAAGATC--AGGGCCAGTGGCGCTTACATTCGTGGTACCAACGGCA 732928 Query 75516 A-ATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAAT 75574 | | || | ||| | | |||||| | || |||| ||| |||| || || ||||| | Sbjct 732927 AGAGCA-ACGGTCTAGTCCCAATGTTACGTATATTCAACTCCACTGCTCGTTATGTTGAC 732869 Query 75575 CAAGCGGGGCGTCGCAAG------GGGTCCATCGCGGTCTACTTGGAACCATGGCATGCC 75628 || ||| || ||||| || ||| | || ||||| | || ||||||||||| Sbjct 732868 CA---GGGTGGTGGCAAGCGTAAAGGTTCCTTTGCCATCTACCTTGAGCCATGGCATGCT 732812 Query 75629 GATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGGCTCGGTGTAGA 75688 || || ||||| || || || || || ||||| |||| || || ||||| | Sbjct 732811 GACATTATGGACTTTCTGGACTTGCGCAAGAACCACGGTGCTGAGGAAGCTCGCGCCCGT 732752 Query 75689 GATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGGTGGT 75748 ||| | || | | |||||||||| ||||| || |||||||| |||||| ||| Sbjct 732751 GATTTGTTCTATGCTTTGTGGATTCCTGACCTGTTTATGAAGCGTGTTGAGTCCAACGGT 732692 Query 75749 CAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTGGGTGAGGAG 75808 | ||| | || | ||||| || || | || | | || | |||||| ||| Sbjct 732691 GACTGGACACTGATGTGTCCCGATGAGTGCCGTGGCTTATATGATGTTTGGGGTGATGAG 732632 Query 75809 TTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGC- 75867 || || ||||| ||||| || || || ||||||| | | |||| | ||||| Sbjct 732631 TTCGAGGCCCTATACACCAAATACGAGATGGAGGGTCTTGGTCGTAAGACTATCCCAGCA 732572 Query 75868 ----CGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATA 75923 | | | ||||| | |||| |||| |||| |||||||| | || | || Sbjct 732571 CAGACCCTGTGGTTTGCCA---TATT-GCAAA-GTCAGATAGAGACTGGCAACCCGTTTA 732517 Query 75924 TGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGA 75983 |||| || ||||||||||| || ||| ||||| ||||| |||| || || || Sbjct 732516 TGCTCTATAAGGATGCTTGCAATGCCAAGTCGAACCAGCAGAATCTGGGTACTATTAAAT 732457 Query 75984 GCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCA 76043 ||| || || || || ||| | |||||||| | || ||| ||||| || | Sbjct 732456 CCTCTAACCTGTGTTGCGAGATTGTTCAGTACACATCTCCCGAGGAGGTTGCTGTATGTA 732397 Query 76044 ATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATG 76103 | ||||||||||| || ||||| | |||||| | | |||| || | || | Sbjct 732396 ACTTGGCATCAATTGCACTTCCCATGTATGTGGACAAGGAGAACAAGACCTACGACTTCA 732337 Query 76104 AAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAA 76163 | || || | || | | | ||||| | || || ||| |||||||| | | Sbjct 732336 AGAAGCTGTACGACGTTGCTCGTGTGATTACCTACAACCTGAACAAGGTCATTGATCGTA 732277 Query 76164 ATTTTTATCCCGTTGAGACTGCGCGAAAG---TCTAATATGCGACACAGACCTATTGGTT 76220 | | || |||||| ||| | ||| || ||| || ||||| || |||||| Sbjct 732276 ACTACTACCCCGTT---CCTGAGGCCAAGGTATCAAATCACCGCCACAGGCCCATTGGTG 732220 Query 76221 TGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATG 76280 | || ||||| |||||||| ||| || || ||| || || ||||||| || || | Sbjct 732219 TCGGCGTTCAGGGTCTCGCTGATACCTTCATGTTGATGCGTTATCCATTTGAGTCCGAGG 732160 Query 76281 AAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG--- 76337 | || |||||| |||| |||||| ||||| || || || ||| | |||| | Sbjct 732159 AGGCTAAGGAGCTGAACCGTCGTATATTTGAGACTATATACTACGGGTGTTTGGATGAAT 732100 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 | | || | ||||||| | ||| | || |||| | || || || |||| Sbjct 732099 CAATTT---CACTGGCTGAGAAGTATGGTACTTACGAGAGTTACCCAGGGTCACCAGCGT 732043 Query 76398 CCCAAGGGGTGCTTCAGTTTGATATGTGGG----AA--GGTGAAACCAAGCTCAACTACG 76451 |||| || |||||||||||| | |||| || | ||| | |||| | | | Sbjct 732042 CCCAGGGTAAGCTTCAGTTTGACCTTTGGGGTGCAACTGTTGACAACAAGTT---ATGGG 731986 Query 76452 ACTGGGATGTTCTCAAGGAACGCAT---CAAGGAGAAGGGTCTTCGTAACAGTCTTTTGA 76508 ||||||||| |||||| | || || ||| | | |||| | || ||| || || Sbjct 731985 ACTGGGATGGCCTCAAGCAGCGTATGGCCAA--ACACGGGT-TACGCAACTCGCTATTCC 731929 Query 76509 TGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAAC 76568 |||| || ||||||||||| ||||| |||| || |||| || || || | || || | Sbjct 731928 TGGCGCCCATGCCAACAGCATCCACATCACAGATTCTGGGCAACAACGAGTCGTTCGAGC 731869 Query 76569 CATACACAACAAACATCTAC 76588 | ||||| | || |||||| Sbjct 731868 CCTACACCAGCAATATCTAC 731849 >seq9 Length=2593320 Score = 104 bits (114), Expect = 3e-17 Identities = 297/453 (66%), Gaps = 28/453 (6%) Strand=Plus/Plus Query 14362 GGATGGTCTCAAGCCTTCACAGAGGAAAGTGATGTATGCTTGCTTCCATAAGAATCTCAA 14421 ||||||| ||||| ||||||||| ||| | | | |||| | | || || Sbjct 1027850 GGATGGTTGGAAGCCAGGACAGAGGAAGGTGCTCTTCGGTTGCCTGAAGCGTAACCTAGT 1027909 Query 14422 GGATGAAATGAAGGTGGCACAACTGGCGGCATATGTCGCGGACAAGTCTGCGTACCACCA 14481 || |||| ||||||||||| || | | ||||||||||| | ||||| |||||||| Sbjct 1027910 GGGTGAATGTAAGGTGGCACAGCTCACAGGTTATGTCGCGGAACACTCTGCATACCACCA 1027969 Query 14482 TGGTGAAGTATCCTTAGCGG----ACACGATTGTTAAGTTGGCAAACGACTACACGGGTT 14537 ||| |||| ||| || | | || ||| | || ||||| | ||| || | Sbjct 1027970 TGGAGAAG----CTTCGCTGCAACAAACCATTATCAATATGGCACAGAACTTTGTAGGGT 1028025 Query 14538 CAAACAACATTAACCTTCTTGAACCGTGTGGTCAATTTGGTACGCGTCTCATGGGTGGTA 14597 | ||||| || ||| | | ||||| || ||||| ||||||| ||| |||||||| Sbjct 1028026 CCAACAATATCAACGTGTTGGAACCATGCGGTCAGTTTGGTAGCCGTAAGGAGGGTGGTA 1028085 Query 14598 AGGATGCTTCT-CAGACGAGGTACATTTTCACAAAACTTA--CCAAGGAGGCTCGCAAGA 14654 ||||||| ||| ||| || | ||||| ||||| || |||| |||| || | || Sbjct 1028086 AGGATGCATCTGCAG-CGCGTTACATCTTCACCAAGCTTAACCCAA------TCACGAG- 1028137 Query 14655 TCTTTGATCCTCG-------GGATGACCCGATCCTCAACTACTTGGACGATGATGGACGC 14707 ||||| ||| ||||| ||||| | ||| | | || || || | Sbjct 1028138 --GTTGATTTTCGTAGAAGAAGATGATAATATCCTGGAGTACCAGAATGAAGAGGGGCAG 1028195 Query 14708 TCCATTGAACCAGACTTTTACATGCCAACTTTACCAATGGTTCTCGTGAATGGAACCGAG 14767 |||| ||||| | ||||| ||||| |||| ||||| | || |||||| | || Sbjct 1028196 ACCATAGAACCGATGTACTACATACCAACAATACCCATGGTATTGGTCAATGGATCTGAA 1028255 Query 14768 GGTATCGGTACGGGTTTCAGTTGCTATGTACCA 14800 || || ||||| || ||||| || | ||||| Sbjct 1028256 GGGATAGGTACAGGATTCAGCAGCCAGATACCA 1028288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569495600320