Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2 116 1e-20 seq8 104 7e-17 >seq2 Length=821816 Score = 116 bits (128), Expect = 1e-20 Identities = 218/315 (69%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||||||||| ||||| ||| || || | ||| || | || || || ||| ||||| Sbjct 414023 CATAATGTCCTCCATGGCCTTCATCAACCTACGTTGGACGTATCCTGTCTCAGAGGTTTT 414082 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||| ||||| || | ||| |||| |||||||| || |||||||| | || | ||| Sbjct 414083 ACAAGCGGTATCGATAACACCTTCACGGCCACCCATGGCGTGGAAGAACATTTCCTGCGG 414142 Query 302685 TCGT-AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGA 302743 ||| || ||| | | | ||| || ||||| ||||| |||||| || ||| Sbjct 414143 -CGTGAGACCCGATAGATATGAGTTCGACACGAATCCACGACTCTCGGGTCCATAGTCAT 414201 Query 302744 ACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAA 302803 |||| ||||||| ||||| | || | | |||| | || | |||||| || || | Sbjct 414202 GCTTGATAAAGTGCGGCAGTGACCGATCCCTGAAGCCAAAGGGCACACGCTTACCCTCGA 414261 Query 302804 CGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTA-AATCACTGCCCTTGGAG 302862 |||||||||| |||| ||| | || ||||| ||||| || | | || | |||||||| Sbjct 414262 CGTTCTGCTGGCCCACGCAGGCTATAATCTGTGAAATGTTGATAGTCGAT-CCCTTGGAC 414320 Query 302863 CCAGCATTTACCATA 302877 || ||||||||| Sbjct 414321 CCGCTGTTTACCATA 414335 >seq8 Length=1729419 Score = 104 bits (114), Expect = 7e-17 Identities = 130/176 (74%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 || ||||||| ||||||||| || |||||||||||||||| ||| ||||| ||||| || Sbjct 495435 GCCCCGTGAGAAATCATACAGTCGCGTTCCATTTCACCAAAACGAAGACCTCCATCTCTT 495494 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACC-CTGAGCACGATAATT 233391 |||||||| | | | ||| | || | | ||| ||| || ||| || | | || Sbjct 495495 GACCTACCTTCGGTGGGTTGTCTGGTGAGCATAGTAACTGGTCCTCTG-GCTCTAGCATG 495553 Query 233392 AATTTTATCTTTAACCATATGCTTCAGTCTCATATAATAACACGGACCAATAAATA 233447 |||||||||| ||||| |||||||| || |||||| ||| || ||||||| Sbjct 495554 TATTTTATCTTCCACCATGTGCTTCAGCCTTTGGTAATAAGTCGGGCCGATAAATA 495609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817335992718