Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq10 98.7 9e-16 seq2 96.9 3e-15 >seq11 Length=827912 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || ||||||| |||| |||||||| ||||| | || || || ||| Sbjct 716002 GATGCAGATTTTCGTTAAAACCTTAACGGGTAAAACCATTACATTGGAGGTTGAGCCCAG 715943 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | |||| || || |||||||| ||||| || || || || || || || Sbjct 715942 TGACACTATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCA 715883 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || |||||||||||||| || || ||| |||| ||| | | |||| || || || Sbjct 715882 GCAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAA 715823 Query 24883 CATTCAAAAGGA 24894 ||| || ||||| Sbjct 715822 CATCCAGAAGGA 715811 >seq10 Length=1797577 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || ||||| || || || | || || || ||| | Sbjct 1344336 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344277 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| ||||| || || || || || || || Sbjct 1344276 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1344217 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||| |||| ||| | | |||| || || ||| Sbjct 1344216 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1344157 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||| | || ||||| ||| | || || Sbjct 1344156 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTGCGTTTGAGGGGTGG 1344110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || ||||| || || || | || || || ||| | Sbjct 1344108 ATGCAAATTTTTGTCAAGACTCTTACTGGTAAGACCATCACCTTGGAGGTGGAGCCCAGC 1344049 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || || ||||||||| ||||| || || || || || || || Sbjct 1344048 GACACTATCGAAAACGTCAAGGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGACCAG 1343989 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || |||||||||||||| || || ||| |||| ||| | | |||| || || ||| Sbjct 1343988 CAGCGTTTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACGTTGTCTGACTACAAC 1343929 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || ||| | || || || ||| | || ||| Sbjct 1343928 ATCCAGAAGGAGAGTACTCTCCACCTAGTTTTACGTTTGAGGGGTGGC 1343881 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 24731 GGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAG 24790 ||||| || || || | || || || ||| |||||| | |||| || || |||| Sbjct 1344537 GGTAAGACCATCACCTTGGAGGTGGAGCCCAGCGACACTATCGAAAACGTCAAGGCAAAG 1344478 Query 24791 ATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAG 24850 ||||| ||||| || || || || || || || || |||||||||||||| || || ||| Sbjct 1344477 ATCCAGGACAAGGAGGGTATTCCCCCAGACCAGCAGCGTTTGATCTTTGCTGGTAAGCAG 1344418 Query 24851 CTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTG 24910 |||| ||| | | |||| || || ||||| || ||||| || || ||| | Sbjct 1344417 TTGGAAGATGGTCGTACGTTGTCTGACTACAACATCCAGAAGGAGAGCACTCTCCACCTA 1344358 Query 24911 GTGTTGCGATTGCGCGGAGG 24930 || ||||| ||| | || || Sbjct 1344357 GTTTTGCGTTTGAGGGGTGG 1344338 >seq2 Length=821816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 199/291 (68%), Gaps = 9/291 (3%) Strand=Plus/Plus Query 139357 CGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAAC 139416 || |||| || |||||||| || | ||| | ||||| | || || ||| |||| ||| Sbjct 732660 CGGCACTCATCGGGACACATCAGTGTCCAGTCACCGTTGGACTCAACACGCTTCATAAAC 732719 Query 139417 AGATCCGGAATCCACAAAGCGAACAGCAAAT--CGCGCGCCTTCTTATCTTCCGAACCCA 139474 || || |||||||||||||| | | ||||| || |||| || || || | ||| Sbjct 732720 AGGTCAGGAATCCACAAAGCATAGAACAAATCACGGGCGCGAGCT--TCCTCAGCACCGT 732777 Query 139475 TGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGG 139534 ||| || || || || || | || |||||| |||||||| || || ||||||| Sbjct 732778 GGTTCTTGCGCAAGTCCAGAAAGTCCATAATGTCAGCATGCCATGGCTCAAGGTAGATGG 732837 Query 139535 CCATTGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATA 139591 | | | ||||| || ||| ||||| || || || | || ||| ||||||| Sbjct 732838 CAAAGGAACCTTTACGCTTGCCACCACCCTGGTCAACATAACGAGCAGTGGAGTTGAATA 732897 Query 139592 CGCGCAACATCGGCTCCAGACCGCTCGCTGTT-CCGTTGGTGCTACGGATG 139641 || ||||| || | |||||| | ||| || |||||||| | ||| ||| Sbjct 732898 TACGTAACATTGGGACTAGACCG-TTGCTCTTGCCGTTGGTACCACGAATG 732947 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 138514 AATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCG 138573 |||||||| || || || || ||| || ||| ||||| | ||||| ||||| ||| Sbjct 731823 AATTCACCACTCAGCACGCGGCGGTAGTAGATATTGCTGGTGTAGGGCTCGAACGACTCG 731882 Query 138574 TTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAGAATTC 138633 ||||| ||||||||||| | |||| || || |||||| ||||| || || || || Sbjct 731883 TTGTTGCCCAGAATCTGTGATGTGGATGCTGTTGGCATGGGCGCCAGGAATAGCGAGTTG 731942 Query 138634 CGTAAACCGTG 138644 ||||| ||||| Sbjct 731943 CGTAACCCGTG 731953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897521267920