Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9 147 2e-29 seq11 129 4e-24 >seq9 Length=2593320 Score = 147 bits (162), Expect = 2e-29 Identities = 399/603 (66%), Gaps = 11/603 (2%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||| | ||| || || ||||| ||| | |||| | || || || | | Sbjct 2152501 GTACCACCACCAAGATCGAAGATGAGTACGTTCTTCTCTTCAGATCCCTTCTTGTCCAAA 2152560 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| || ||||| || ||||| || || || | || ||| || ||||||||| Sbjct 2152561 CCGTAGGCAATGGCGGCAGCGGTGGGTTCGTTGATGATACGCATAACGTTGAGACCAGCA 2152620 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || || || || || || || || || || ||||| || || || || || || Sbjct 2152621 ATGGTACCAGCGTCCTTGGTAGCCTGCCTCTGGGAGTCGTTGAAGTAGGCGGGTACGGTG 2152680 Query 282464 ATAACGGCATCTGTTAC-TTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACT 282522 || |||||||| |||| |||| ||| ||| | || ||| |||||||| | Sbjct 2152681 ATGACGGCATCCTTTACGGTCTTACCCAGGTACAGCTC-GGCAATTTCCTTCATTTTGAT 2152739 Query 282523 TAAAATCATTGATGAAATTTGTTCTGG--AGAATATTGCTTGGATTCATTTTGATATGAT 282580 | | ||| |||||||||| |||||| ||| | ||| || || | | Sbjct 2152740 GAGCACCATGGATGAAATTTCTTCTGGGTGGAAGCT--CTTCTTTTGTCCCTGGAAGGTG 2152797 Query 282581 ACTTCAAAATATGGTTTATTACCAACA---TTAATAACTTTAAATGGCCAATATTTCATA 282637 || || | ||||||| ||| ||| || | || || |||||||| | |||||| Sbjct 2152798 ACCTCGATGGTTGGTTTACCACCGACACCGTTGGTGACCTTGAATGGCCAGTGTTTCATG 2152857 Query 282638 TCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAAAAT 282696 || || || | | ||| | ||||| || ||||| | | ||| || || || | Sbjct 2152858 TCATCCTGTACGGTCTTGTC-GTCGAATCTCCTTCCAATAAGCCTTTTAGCGTCGAATAC 2152916 Query 282697 AGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 282756 || || || ||| ||| |||| | ||||| ||||| || || ||| |||| || Sbjct 2152917 GGTGTTCTCAGGGTTACGTGCTTCTTGGTTCTTGGCGGCATCACCGATAAGACGTTCGGT 2152976 Query 282757 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 || || || | || || || || ||||| | |||||| || ||||| | ||| ||||| Sbjct 2152977 GTCGGTGAAGGCTACGTAGGAGGGTGTTGTTCTATTACCCTGGTCATTAGGAATGATTTC 2153036 Query 282817 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAAT 282876 || || | | |||||||||||||| | || || || || |||||||| || Sbjct 2153037 GACATTGTTGTCCTTGTATACACCTACACAAGAGTAGGTAGTACCCAAGTCAATACCGAT 2153096 Query 282877 AGC 282879 ||| Sbjct 2153097 AGC 2153099 >seq11 Length=827912 Score = 129 bits (142), Expect = 4e-24 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| |||||||| | || |||||||| ||||| || || |||||||| || ||||| Sbjct 776877 TTTTTCTCAAGACCGAAAGCCAAAGCAGCGGCAGTCGGCTCGTTAATAATCCTTAAAACG 776936 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 | | |||||||||| | || || || || || || || || ||||| ||||| |||||| Sbjct 776937 TCCAAACCAGCAATTTTGCCAGCGTCCTTGGTAGCCTGCCTCTGTGAGTCGTTGAAATAT 776996 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTT 282482 ||||| ||||||||||| || | ||||||| Sbjct 776997 GCAGGCACAGTAATAACAGCCTTAGTTACTT 777027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740629712659164