Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq11 134 3e-26 seq10 134 3e-26 >seq11 Length=827912 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||||||| |||||||| || |||||| || ||||| || || || |||| Sbjct 715773 TACCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAG 715832 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | || || ||||||||||| | | || || ||||| | Sbjct 715833 ACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGG 715892 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || |||||||| || || ||| | || || | Sbjct 715893 GAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATAGTGTCACTGGGCTCAA 715952 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || || || || || || || || || || |||||||| Sbjct 715953 CCTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCAT 716001 >seq10 Length=1797577 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||||||||| ||||| ||| |||||| || ||||| || || || |||| Sbjct 1344108 TACCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAG 1344167 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | || || ||||||||||| | | || || ||||| | Sbjct 1344168 ACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGG 1344227 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||||| || || ||||| || || || | || || | Sbjct 1344228 GAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344287 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 1344288 CCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 129 bits (142), Expect = 1e-24 Identities = 171/236 (72%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 82576 ATCACCTA-CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTA 82634 ||||||| || || |||||||| | ||||| ||| |||||| || ||||| || || Sbjct 1343873 ATCACCTTGCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTG 1343932 Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || ||||| | | | ||| ||||| | || || ||||||||||| | | || || Sbjct 1343933 TAGTCAGACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGG 1343992 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 ||||| || || || ||||| || || |||||||| || || ||||| || || || | Sbjct 1343993 TCTGGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTG 1344052 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| || || ||||| || || | ||||| ||||| || ||||| Sbjct 1344053 GGCTCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||||||||| ||||| ||| ||||| || ||||| || || || |||| Sbjct 1344336 TACCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAG 1344395 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | || || ||||||||||| | | || || ||||| | Sbjct 1344396 ACAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGG 1344455 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||||| || || ||||| || || || | || || | Sbjct 1344456 GAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344515 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | ||||| || || ||||| |||| Sbjct 1344516 CCTCCAAGGTGATGGTCTTACCTG 1344539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981827023884746