Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq11 122 6e-23 seq10 113 3e-20 >seq11 Length=827912 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||||| || ||||| ||||| ||||| || || |||||||| || || Sbjct 715774 ACCACCCCTCAAACGTAGAACTAAATGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 715833 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 715834 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 715893 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || | | |||| || | ||||| || | || | Sbjct 715894 AATACCCTCCTTGTCCTGGATCTT-GGCCTTGACATTTTCGATAGTGTCACTGGGCTCAA 715952 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || |||||||| ||||| ||||| || || |||||||| Sbjct 715953 CCTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAACGAAAATCTGCAT 716001 >seq10 Length=1797577 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||||||||| || | || ||||| ||||| || || |||||||| || || Sbjct 1343882 CCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGAC 1343941 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 1343942 AACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGA 1344001 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || || | || | || | |||||||| | ||||| Sbjct 1344002 ATACCCTCCTTGTCCTGGATCTT-TGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCAC 1344060 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || ||||| || | || || ||||| || |||||| Sbjct 1344061 CTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCATA 1344109 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| || || | || ||||| ||||| || || |||||||| || || Sbjct 1344109 ACCACCCCTCAAACGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGA 1344168 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 1344169 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344228 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || || | || | || | |||||||| | |||| Sbjct 1344229 AATACCCTCCTTGTCCTGGATCTT-TGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344287 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || ||||| || | || || ||||| || |||||| Sbjct 1344288 CCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCATA 1344337 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| |||||||| || || | || ||||||||||| || || |||||||| || || Sbjct 1344337 ACCACCCCTCAAACGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGA 1344396 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || || || ||||| |||||||||||||| ||| | || Sbjct 1344397 CAACGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGG 1344456 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| || || || | || | || | |||||||| | |||| Sbjct 1344457 AATACCCTCCTTGTCCTGGATCTT-TGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCA 1344515 Query 33701 CGTCAACCGTGATCGTTTTACCTG 33724 | || | ||||| || ||||||| Sbjct 1344516 CCTCCAAGGTGATGGTCTTACCTG 1344539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328703943914880