Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Babesia_20bovis_20[genbank_20GCA_5F000165395.1_202007-09-06] 14 sequences; 8,179,706 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq11 104 2e-17 seq10 98.7 1e-15 seq2 93.3 4e-14 >seq11 Length=827912 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 134523 TCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAA 134581 ||||| || ||||||||||| | ||||| | || || || | ||| || || ||||| Sbjct 715811 TCCTTCTGGATGTTGTAGTCAGACAACG-TACGACCATCTTCCAACTGCTTACCAGCAAA 715869 Query 134582 AATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGC 134641 |||||||||||||| || || || || || || || || || || || ||||| Sbjct 715870 GATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACATT 715929 Query 134642 GTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAAC 134701 || | ||||| | || || || | |||||||||||||| ||||| |||||||| Sbjct 715930 TTCGATAGTGTCACTGGGCTCAACCTCCAATGTAATGGTTTTACCCGTTAAGGTTTTAAC 715989 Query 134702 GAAAATTTGCATTTTG 134717 |||||| ||||| ||| Sbjct 715990 GAAAATCTGCATCTTG 716005 >seq10 Length=1797577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 134482 CCTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGT 134541 |||| || || || | || || || ||||| || || ||||| || |||||||||| Sbjct 1343877 CCTTGCCACCCCTCAAACGTAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGT 1343936 Query 134542 C-GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCG 134600 | | ||||| | || || || | ||| || || ||||| |||||||||||||| || Sbjct 1343937 CAGACAACG-TACGACCATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCT 1343995 Query 134601 GGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT 134660 || || || || || || || || || ||| ||||| || | |||||| | Sbjct 1343996 GGGGGAATACCCTCCTTGTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGC 1344055 Query 134661 TCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || | || ||||| ||||| || | ||| || || ||||||||||| Sbjct 1344056 TCCACCTCCAAGGTGATGGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344108 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || ||||| || || ||||| || ||||||||||| | ||||| | || Sbjct 1344122 CGCAAAACTAGGTGGAGAGTACTCTCCTTCTGGATGTTGTAGTCAGACAACG-TACGACC 1344180 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | ||| || || ||||| |||||||||||||| || || || || || || || Sbjct 1344181 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 1344240 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || ||| ||||| || | |||||| | ||||| || | || || Sbjct 1344241 GTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGAT 1344300 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| ||||| || | ||| || || ||||||||||| Sbjct 1344301 GGTCTTACCAGTAAGAGTCTTGACAAAAATTTGCAT 1344336 Score = 82.4 bits (90), Expect = 8e-11 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGA 134557 ||||| || ||||| || ||| ||||| || ||||||||||| | ||||| | || Sbjct 1344350 CGCAAAACTAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCAGACAACG-TACGACC 1344408 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || | ||| || || ||||| |||||||||||||| || || || || || || || Sbjct 1344409 ATCTTCCAACTGCTTACCAGCAAAGATCAAACGCTGCTGGTCTGGGGGAATACCCTCCTT 1344468 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 || || || ||| ||||| || | |||||| | ||||| || | || || Sbjct 1344469 GTCCTGGATCTTTGCCTTGACGTTTTCGATAGTGTCGCTGGGCTCCACCTCCAAGGTGAT 1344528 Query 134678 GGTTTTACC 134686 ||| ||||| Sbjct 1344529 GGTCTTACC 1344537 >seq2 Length=821816 Score = 93.3 bits (102), Expect = 4e-14 Identities = 313/485 (65%), Gaps = 2/485 (0%) Strand=Plus/Minus Query 8835 CGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAAT 8894 ||| || ||||| ||||| || |||| |||||| || || | || | || || | Sbjct 731951 CGGGTTACGCAACTCGCTATTCCTGGCGCCCATGCCAACAGCATCCACATCACAGATTCT 731892 Query 8895 GGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGC 8954 ||| |||||||| || || ||||| | ||||| ||| | ||| | || ||| || Sbjct 731891 GGGCAACAACGAGTCGTTCGAGCCCTACACCAGCAATATCTACTACCGCCGCGTGCTGAG 731832 Query 8955 CGGCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTA 9014 || || || || || | || | |||||| |||| || || | || ||| ||| Sbjct 731831 TGGTGAATTCTTTGTGGTCAACCCTCATTTACTGCGTGATCTGGTAGACCTTGGCCTTTG 731772 Query 9015 CGACGACAAAATGCGCGATGCCATCGTGGAAGCCAACGGCAGCGTTCAGAACATTGACGC 9074 || ||| ||| || | | | |||||| ||| ||||||| | Sbjct 731771 GGATGACGCTATGAAGGAGAAGTTGATTGCTTACAACGGGTCGCTTCGTCACATTGAGGG 731712 Query 9075 GGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAATGAAGCAAAGCACGCT 9134 | ||||| ||||| || || || || || |||||||||||||| ||||| | | | Sbjct 731711 TATCCCTCAGCACATCAAGGACCTTTACAAGACCGTTTGGGAAATTAAGCAGAAGAGCAT 731652 Query 9135 GATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTT 9194 |||| |||||||||||| | || ||| ||||||||| ||||| | || | | Sbjct 731651 TATCGACATGGCTGCGGACCGTGGTATTTTCATTGATCAGTCACAATCGCTCAATATCTA 731592 Query 9195 CGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCA-TTATTTAACTTGGAAAATGG 9253 | | | | || |||| || | || |||| || || || | | | ||||| | || Sbjct 731591 CCTTGACCAGCCTACTTTCGGCAAGCTGACCAGTATGCACTTCTATGGC-TGGAAGAAGG 731533 Query 9254 GTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTA 9313 || | || || || | ||||| || |||||| | | || |||| |||| ||||| | Sbjct 731532 GTCTGAAGACCGGTACCTACTACTTACGCACACAGGCTGCTACTGACGCTATTAAATTCA 731473 Query 9314 CAGTT 9318 | ||| Sbjct 731472 CTGTT 731468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398311555280